Description Usage Arguments Details Value Author(s) References See Also Examples
Function to read RFLP data (e.g. generated with software package Gene Profiler 4.05 (Scanalytics Inc.)) for DNA fragment analysis and genotyping, and exported to a text file.
1 |
file |
character: RFLP file to read in. |
The function reads data from a text file which was generated e.g. with the
software package Gene Profiler 4.05 (Scanalytics Inc.) for DNA fragment
analysis and genotyping. The data file contains sample identifier (Sample
),
band number (Band
), molecular weight (MW
) and gel identifier (Gel
)
(see RFLPdata
).
If gel identifier Gel
is missing it is extracted from the sample identifier
Sample
.
A data.frame
with variables
Sample
character: sample identifier.
Band
integer: band number.
MW
integer: molecular weight.
Gel
character: gel identifier.
Fabienne Flessa Fabienne.Flessa@uni-bayreuth.de,
Alexandra Kehl Alexandra.Kehl@uni-tuebingen.de,
Matthias Kohl Matthias.Kohl@stamats.de
Flessa, F., Kehl, A., Kohl, M. Analysing diversity and community structures using PCR-RFLP: a new software application. Molecular Ecology Resources 2013 Jul; 13(4):726-33.
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