add_names: Add row and column names to the adjacency matrix A
In RGBM: LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction
View source: R/proposed_steps.R
add_names R Documentation
Add row and column names to the adjacency matrix A
Description
Here we add the names of the transcription factors (Tfs) as rownames and names of the target genes as column names to the adjacency matrix A.
Usage
add_names(A, tfs, targets)
Arguments
A
Adjacency matrix A obtained as a result of GBM procedure.
tfs
List of names of transcription factors.
targets
List of names of target genes.
Details
In case of DREAM Challenge datasets list of transcription factors is same as list of target genes and are referred as G1, ..., G100.
Author(s)
Raghvendra Mall <rmall@hbku.edu.qa>
RGBM documentation built on April 14, 2023, 9:10 a.m.
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View source: R/proposed_steps.R
| add_names | R Documentation |
Add row and column names to the adjacency matrix A
Description
Here we add the names of the transcription factors (Tfs) as rownames and names of the target genes as column names to the adjacency matrix A.
Usage
add_names(A, tfs, targets)
Arguments
A |
Adjacency matrix A obtained as a result of GBM procedure. |
tfs |
List of names of transcription factors. |
targets |
List of names of target genes. |
Details
In case of DREAM Challenge datasets list of transcription factors is same as list of target genes and are referred as G1, ..., G100.
Author(s)
Raghvendra Mall <rmall@hbku.edu.qa>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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