v2l: Convert adjacency matrix to a list of edges

In RGBM: LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction

Convert adjacency matrix to a list of edges

Description

This function converts adjacency matrix A to a sorted list of edges, e.g. a list in which edges are sorted by decreasing confidence.

Usage

v2l(A, max = 1e+05, check.names = TRUE)

Arguments

A	Input adjacency matrix.
max	Maximal length of the resulting list. This number may be lower than the number of all the edges from adjacency matrix. Then only top max edges will be returned.
check.names	Checks name of the gene ids

Value

A data frame of sorted edges: (1) list of sources (2) list of destinations (3) list of confidences. Elements in all the lists correspond to each other.

Author(s)

Raghvendra Mall <[e-mail]>

RGBM documentation built on April 14, 2023, 9:10 a.m.