get_filepaths: Generate filepaths to maintain adjacency matrices and images

View source: R/proposed_steps.R

get_filepathsR Documentation

Generate filepaths to maintain adjacency matrices and images

Description

This function generates a set of filepaths which are used to keep the adjacency matrix A obtained after the first_GBM_step + null_model_refinement_step. It also generates a path where an image of the variable importance curves for several target genes can be kept.

Usage

get_filepaths(A_prev, experimentid, outputpath, sample_type)

Arguments

A_prev

Adjacency matrix A obtained after first_GBM_step + null_model_refinement_step.

experimentid

The id of the experiment being conducted. It takes natural numbers like 1,2,3 etc. By default it's 1.

outputpath

Location where the Adjacency_Matrix and Images folder will be created.

sample_type

String arguement representing a label for the experiment i.e. in case of DREAM3 challenge sample_type="DREAM3".

Value

Returns a data frame where the first element in the data frame is the location where the Adjacency_Matrix folder is located in the filesystem, second element represents the location where the Images folder is located in the filesystem, third element represents the path to the file where the Adjacency_Matrix will be written.

Author(s)

Raghvendra Mall <rmall@hbku.edu.qa>


RGBM documentation built on Aug. 11, 2022, 5:10 p.m.

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