API for RHybridFinder
Identification of Hybrid Peptides in Immunopeptidomic Analyses
| Global functions | |
|---|---|
| HybridFinder | Man page Source code |
| checknetMHCpan | Man page Source code |
| cis_parallel | Source code |
| convert_cis_positions_list_into_df | Source code |
| create_spliced_non_cis_peptides | Source code |
| create_spliced_peptides | Source code |
| create_tmp_directory | Source code |
| db_Human_Liver_AUTD17 | Man page |
| db_rerun_Human_Liver_AUTD17 | Man page |
| denovo_Human_Liver_AUTD17 | Man page |
| export_HybridFinder_results | Man page |
| export_checknetmhcpan_results | Man page Source code |
| export_step2_results | Man page Source code |
| find_cis_spliced_peptides | Source code |
| find_cis_spliced_peptides_parallel | Source code |
| find_cis_start_positions | Source code |
| find_linear_peptides | Source code |
| find_linear_peptides_parallel | Source code |
| find_trans_spliced_peptides | Source code |
| find_trans_spliced_peptides_parallel | Source code |
| get_detailed_cis_positions | Source code |
| linear_parallel | Source code |
| load_data_for_checking_examples | Source code |
| make_fake_HF_proteins | Source code |
| mhc_check | Man page Source code |
| netmhcpan_call | Source code |
| netmhcpan_list_alleles | Man page |
| peptide_rerun_cleanup | Source code |
| prepare_input_for_HF | Source code |
| read_nmhcp_file | Source code |
| search_for_cis_spliced_peptides | Source code |
| search_for_linear_peptides | Source code |
| search_for_trans_spliced_peptides | Source code |
| step2_wo_netMHCpan | Man page Source code |
| trans_parallel | Source code |
