mhc_check: mhc_check

In RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses

Description

this function only contains the alleles list, read by netMHCpan, the list was retrieved by reading the file exported from netMHCpan, using the following command line "netMHCpan -listMHC"

Usage

mhc_check(netmhcpan_alleles)

Arguments

netmhcpan_alleles

the netmhcpan alleles to be used for the netmhcpan call.

Details

a custom error is printed in case the allele is not written correctly

Value

• returns a custom error message if MHC/HLA allele(s) are not written correctly

• returns nothing if there are no issues. If HLA alleles are not written correctly

Examples

if (interactive()) {
 mhc_check("HLA-A02:01")
 mhc_check("HLA-A0201")
}

RHybridFinder documentation built on Aug. 17, 2021, 5:09 p.m.