export_checknetmhcpan_results: export_checknetmhcpan_results

In RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses

Description

this function allows to export the results generated from checknetMHCpan()

Usage

export_checknetmhcpan_results(list_checknetMHCpan_results, export_dir)

Arguments

list_checknetMHCpan_results	the results generated from running checknetMHCpan()
export_dir	the export directory where the results .csv files should be exported.

Details

In order to be able to have the checknetMHCpan() function results exported, this function will come in handy. Please note that this function is also part of the checknetMHCpan() function (if export_files is set to TRUE and a valid export directory is indicated)

Value

exports a folder containing three files

1. netMHCpan results in long format (the original output)(.csv file)

2. netMHCpan results tidied (in wide format) so as to summarize the information per peptide (.tsv tab-separated file)

3. the updated database search results which contain the categorizatiosn of the peptides found in common between the 2nd database search and the HybridFinder function (.csv file)

Examples

## Not run: 
 export_checknetmhcpan_results(results_checknetMHCpan_Human_Liver_AUTD17, folder_Human_Liver_AUTD17)

## End(Not run)

RHybridFinder documentation built on Aug. 17, 2021, 5:09 p.m.