export_step2_results: export_step2_results

In RHybridFinder: Identification of Hybrid Peptides in Immunopeptidomic Analyses

Description

this function allows to export the results generated from step2_wo_netmhcpan.

Usage

export_step2_results(step2_RHF_results_Exp1, export_dir)

Arguments

step2_RHF_results_Exp1	the results generated from running step2_wo_netMHCpan()
export_dir	the export directory where you would like to have the .csv file saved.

Details

Since netMHCpan is not compatible with Windows OS, the package offers an alternative by outputting the input for netMHCpan and as well the database results with their respective categorizations (cis, trans) established in step1.

Value

exports a folder containing 2 files

1. the peptide list to be entered in a netMHCpan-ready format,(.csv)

2. the updated database search results which contain the categorizatiosn of the peptides found in common between the 2nd database search and the HybridFinder function (.csv file)

Examples

## Not run: 
 export_step2_results(results_step2_Human_Liver_AUTD17, folder_Human_Liver_AUTD17)

## End(Not run)

RHybridFinder documentation built on Aug. 17, 2021, 5:09 p.m.