Files in RHybridFinder

Identification of Hybrid Peptides in Immunopeptidomic Analyses

MD5

NEWS.md

NAMESPACE

DESCRIPTION

LICENSE

R/find_trans_spliced_peptides.R

R/sysdata.rda

R/find_cis_spliced_peptides_parallel.R R/create_tmp_directory.R R/trans_parallel.R R/find_cis_start_positions.R R/peptide_rerun_cleanup.R R/export_step2_results.R R/search_for_linear_peptides.R R/prepare_input_for_HF.R R/create_spliced_peptides.R R/convert_cis_positions_list_into_df.R R/find_cis_spliced_peptides.R R/checknetMHCpan.R R/denovo_Human_Liver_AUTD17.R R/export_checknetmhcpan_results.R R/load_data_for_checking_examples.R R/find_trans_spliced_peptides_parallel.R R/netmhcpan_list_alleles.R R/search_for_trans_spliced_peptides.R R/mhc_check.R R/step2_wo_netMHCpan.R R/get_detailed_cis_positions.R R/db_rerun_Human_liver_AUTD17.R R/linear_parallel.R R/find_linear_peptides.R R/HybridFinder.R R/search_for_cis_spliced_peptides.R R/find_linear_peptides_parallel.R R/read_nmhcp_file.R R/db_Human_Liver_AUTD17.R R/create_spliced_non_cis_peptides.R R/netmhcpan_call.R R/export_HybridFinder_results.R R/make_fake_HF_proteins.R R/cis_parallel.R inst/doc/RHybridFinder.R inst/doc/RHybridFinder.Rmd

inst/doc/RHybridFinder.html

build/vignette.rds

vignettes/RHybridFinder.Rmd

data/db_rerun_Human_Liver_AUTD17.rda

data/db_Human_Liver_AUTD17.rda

data/denovo_Human_Liver_AUTD17.rda

man/db_rerun_Human_Liver_AUTD17.Rd man/HybridFinder.Rd man/step2_wo_netMHCpan.Rd man/export_results.Rd man/export_checknetmhcpan_results.Rd man/checknetMHCpan.Rd man/netmhcpan_list_alleles.Rd man/db_Human_Liver_AUTD17.Rd man/export_step2_results.Rd man/mhc_check.Rd man/denovo_Human_Liver_AUTD17.Rd

RHybridFinder documentation built on Aug. 17, 2021, 5:09 p.m.