API for RJaCGH
Reversible Jump MCMC for the Analysis of CGH Arrays
| Global functions | |
|---|---|
| MetropolisSweep.C | Source code |
| QNH | Man page Source code |
| RJMCMC.NH.HMM.Metropolis | Source code |
| RJaCGH | Man page Source code |
| akaike | Source code |
| check.no.float | Source code |
| createRegionsList | Source code |
| f2tmp | Source code |
| genomePlot | Man page Source code |
| get.jump | Source code |
| get.viterbi.seq2 | Source code |
| getStretchedStateProbs | Source code |
| gm00143 | Man page |
| gm01524 | Man page |
| gm01535 | Man page |
| gm01750 | Man page |
| gm02948 | Man page |
| gm03134 | Man page |
| gm03563 | Man page |
| gm03576 | Man page |
| gm04435 | Man page |
| gm05296 | Man page |
| gm07081 | Man page |
| gm07408 | Man page |
| gm10315 | Man page |
| gm13031 | Man page |
| gm13330 | Man page |
| hidden.states | Source code |
| internal.plot.obs.pred | Source code |
| modelAveraging | Man page Source code |
| modelAveraging.RJaCGH | Man page Source code |
| modelAveraging.RJaCGH.Chrom | Source code |
| modelAveraging.RJaCGH.Genome | Source code |
| modelAveraging.iRJaCGH | Source code |
| normal.HMM.likelihood.NH.C | Man page Source code |
| normal.HMM.likelihood.NH.filter | Source code |
| pREC | Source code |
| pREC_A | Man page Source code |
| pREC_A.RJaCGH | Man page |
| pREC_A.RJaCGH.Chrom | Man page |
| pREC_A.RJaCGH.array | Man page |
| pREC_A.RJaCGH.genome | Man page |
| pREC_S | Man page Source code |
| pREC_S.RJaCGH | Man page |
| pREC_S.RJaCGH.array | Man page |
| pREC_S.RJaCGH.array.Chrom | Man page |
| pREC_S.RJaCGH.array.genome | Man page |
| plot.RJaCGH | Man page Source code |
| plot.RJaCGH.Chrom | Source code |
| plot.RJaCGH.Genome | Source code |
| plot.pREC_S | Man page Source code |
| plotQNH | Man page Source code |
| print.pREC_A | Man page Source code |
| print.pREC_A.Chromosomes | Man page Source code |
| print.pREC_A.none | Man page Source code |
| print.pREC_S | Man page Source code |
| print.pREC_S.Chromosomes | Man page Source code |
| print.pREC_S.none | Man page Source code |
| print.summary.RJaCGH | Man page Source code |
| print.summary.RJaCGH.Chrom | Man page Source code |
| print.summary.RJaCGH.Genome | Man page Source code |
| print.summary.iRJaCGH | Source code |
| readRO2 | Source code |
| relabel.core | Source code |
| relabelStates | Man page Source code |
| relabelStates.RJaCGH | Man page Source code |
| relabelStates.RJaCGH.Chrom | Source code |
| relabelStates.RJaCGH.Genome | Source code |
| relabelStates.iRJaCGH | Source code |
| scale.bound.Dist | Source code |
| simulateRJaCGH | Man page Source code |
| smoothMeans | Man page Source code |
| smoothMeans.RJaCGH | Man page Source code |
| smoothMeans.RJaCGH.Chrom | Source code |
| smoothMeans.RJaCGH.Genome | Source code |
| smoothMeans.iRJaCGH | Source code |
| snijders | Man page |
| states | Man page Source code |
| states.RJaCGH | Man page Source code |
| states.RJaCGH.Chrom | Source code |
| states.RJaCGH.Genome | Source code |
| states.iRJaCGH | Source code |
| summary.RJaCGH | Man page Source code |
| summary.RJaCGH.Chrom | Source code |
| summary.RJaCGH.Genome | Source code |
| summary.iRJaCGH | Source code |
| tempdir.RJaCGH | Source code |
| tempdir2 | Source code |
| tempfile00 | Source code |
| tempfile2 | Source code |
| tempfile3 | Source code |
| the.time.with.ms | Source code |
| trace.plot | Man page Source code |
| writeRO2 | Source code |
