R/RNAseqQC-package.R

In RNAseqQC: Quality Control for RNA-Seq Data

#' @keywords internal
"_PACKAGE"

# The following block is used by usethis to automatically manage
# roxygen namespace tags. Modify with care!
## usethis namespace: start
#' @importFrom dplyr arrange mutate group_by left_join filter rename select summarize pull ungroup bind_cols row_number
#' @importFrom tibble as_tibble column_to_rownames tibble enframe
#' @importFrom magrittr %>%
#' @importFrom purrr map map_dbl map_dfr
#' @importFrom tidyr pivot_longer pivot_wider
#' @importFrom stringr str_sort str_c str_detect
#' @importFrom ggplot2 ggplot aes geom_point geom_line element_text element_line
#' labs theme rel geom_path theme_minimal geom_smooth
#' scale_x_log10 scale_y_log10 scale_x_sqrt scale_y_sqrt scale_y_continuous scale_color_manual
#' scale_color_viridis_c scale_color_viridis_d scale_color_gradient scale_shape_discrete
#' coord_fixed guides guide_colorbar guide_legend geom_histogram geom_hline ylim geom_hline
#' @importFrom SummarizedExperiment assay rowData colData
#' @importFrom utils head
#' @importFrom stats as.dist cor dist p.adjust prcomp
#' @importFrom matrixStats rowMedians
#' @importFrom BiocGenerics colnames
## usethis namespace: end
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