R/data.R

In RNAseqQC: Quality Control for RNA-Seq Data

#' The T47D cell line data of RNA-seq experiment GSE89888
#'
#' The dataset contains the read counts of experiment GSE89888 in which T47D
#' cells with different mutation statuses were treated with E2 (estradiol) or
#' vehicle.
#'
#' @format A DESeqDataSet with 43576 rows (of genes) and 24 columns (of samples).
#' @source \doi{10.1101/2021.05.21.445138}
"T47D"

#' Differential expression results corresponding to the T47D data set.
#'
#' @format A DESeqResults object with 36562 rows and 3 columns.
#' @source See the 'data' vignette on how to reproduce this object.
"T47D_diff_testing"