RNAcirPlot: function for plotting RNA secondary structure in a circos...

In RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting

function for plotting RNA secondary structure in a circos style

Description

Given a RNA secondary structure,it plots RNA secondary structure in a circos style

Usage

RNAcirPlot(ctFile,cex = 1,posNum = 2.5,ifNum = FALSE,
            ifBulge = FALSE,ifExternalLoops = FALSE,ifHairpin = FALSE,
            ifInternalLoops = FALSE,ifMultiBranchLoops = FALSE)

Arguments

ctFile	A RNA secondary structure file containing structure information
cex	The size of base or number in plotting
posNum	The position of number in plotting. Change the position of number if number is plotted
ifNum	Whether to draw number
ifBulge	Whether to emphasize bulge loops
ifExternalLoops	Whether to emphasize external loops
ifHairpin	Whether to emphasize hairpin loops
ifInternalLoops	Whether to emphasize internal loops
ifMultiBranchLoops	Whether to emphasize multi branch loops

Value

Return a RNA secondary structure in a circos style

Author(s)

Zheng Hewei

Examples

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data(DataRNAstr)
RNAcirPlot(DataRNAstr)

RNAsmc documentation built on Jan. 12, 2023, 9:07 a.m.