getScore: Internal function for getting similarity score in a RNA...

In RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting

Internal function for getting similarity score in a RNA secondary structure

Description

Internal function for getting similarity score in a RNA secondary structure

Usage

getScore(h1,i1,b1,m1,s1,e1,
         seqA,seqCode1,h1Num,i1Num,b1Num,m1Num,s1Num,e1Num,
         h2,i2,b2,m2,s2,e2,
         seqB,seqCode2,h2Num,i2Num,b2Num,m2Num,s2Num,e2Num)

Arguments

h1	hairpin_loop result A
i1	internal_loop result A
b1	bulge_loop result A
m1	multi_branch_loop result A
s1	stem result A
e1	external_loop result A
seqA	sequence A
seqCode1	coding sequence A
h1Num	hairpin_loop number A
i1Num	internal_loop number A
b1Num	bulge_loop number A
m1Num	multi_branch_loop number A
s1Num	stem number A
e1Num	external_loop number A
h2	hairpin_loop result B
i2	internal_loop result B
b2	bulge_loop result B
m2	multi_branch_loop result B
s2	stem result B
e2	external_loop result B
seqB	sequence B
seqCode2	coding sequence B
h2Num	hairpin_loop number B
i2Num	internal_loop number B
b2Num	bulge_loop number B
m2Num	multi_branch_loop number B
s2Num	stem number B
e2Num	external_loop number B

Value

Return a list countains similarity score and other information

Author(s)

Zheng Hewei

Examples

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RNAsmc documentation built on Jan. 12, 2023, 9:07 a.m.