strCompare: strCompare

In RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting

strCompare

Description

return similarity score of two RNA secondary structures

Usage

strCompare(ctFile1,ctFile2,randomTime = 1000)

Arguments

ctFile1	A RNA secondary structure file containing structure information
ctFile2	A RNA secondary structure file containing structure information
randomTime	random times of permutation test to get P value

Value

Returns a numerical value which represent the similarity of the two RNA secondary structures.The larger the value, the more similar the two RNA structures are.The maximum value is 10, representing the two RNA secondary structures exactly the same,and 0 is the minmum value.

Examples

###
data(DataCluster1)
data(DataCluster2)
#####RNAstrPlot(DataCluster1)
#####RNAstrPlot(DataCluster2)
strCompare(DataCluster1,DataCluster2,randomTime = 100)

RNAsmc documentation built on Jan. 12, 2023, 9:07 a.m.