getGenus: Taxonomic inspection of the tree at the genus level
In RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies
getGenus R Documentation
Taxonomic inspection of the tree at the genus level
Description
The function returns the most recent common ancestor and the
number of species belonging to each or some user-specified genera within
the phylogenetic tree.
Usage
getGenus(tree,genera=NULL)
Arguments
tree
a phylogenetic tree. The tree needs not to be ultrametric and
fully dichotomous. Generic name and specific epithet must be separated by
'_'.
genera
a character vector including one or more genera to focus on.
Please notice the function is case sensitive.
Value
The function returns a data-frame including the number of species and
the most recent common ancestor of each genera.
Author(s)
Silvia Castiglione, Pasquale Raia, Carmela Serio
Examples
DataCetaceans$treecet->tree
getGenus(tree)
getGenus(tree,c("Mesoplodon","Balaenoptera"))
RRphylo documentation built on June 7, 2023, 5:49 p.m.
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| getGenus | R Documentation |
Taxonomic inspection of the tree at the genus level
Description
The function returns the most recent common ancestor and the number of species belonging to each or some user-specified genera within the phylogenetic tree.
Usage
getGenus(tree,genera=NULL)
Arguments
tree |
a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous. Generic name and specific epithet must be separated by '_'. |
genera |
a character vector including one or more genera to focus on. Please notice the function is case sensitive. |
Value
The function returns a data-frame including the number of species and the most recent common ancestor of each genera.
Author(s)
Silvia Castiglione, Pasquale Raia, Carmela Serio
Examples
DataCetaceans$treecet->tree
getGenus(tree)
getGenus(tree,c("Mesoplodon","Balaenoptera"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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