makeFossil: Make fossil species on a phylogeny
In RRphylo: Phylogenetic Ridge Regression Methods for Comparative Studies
makeFossil R Documentation
Make fossil species on a phylogeny
Description
This function takes an object of class 'phylo' and
randomly changes the lengths of the leaves.
Usage
makeFossil(tree,p=0.5,ex=0.5)
Arguments
tree
a phylogenetic tree. The tree needs not to be ultrametric and
fully dichotomous.
p
the proportion of tips involved. By default it is half of the number
of tips.
ex
the multiplying parameter to change the leaf lengths. It is set at
0.5 by default.
Value
The function produces a phylogeny having the same backbone of the
original one.
Author(s)
Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro
Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco
Carotenuto
Examples
data("DataApes")
DataApes$Tstage->Tstage
makeFossil(tree=Tstage)
RRphylo documentation built on June 7, 2023, 5:49 p.m.
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| makeFossil | R Documentation |
Make fossil species on a phylogeny
Description
This function takes an object of class 'phylo' and
randomly changes the lengths of the leaves.
Usage
makeFossil(tree,p=0.5,ex=0.5)
Arguments
tree |
a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous. |
p |
the proportion of tips involved. By default it is half of the number of tips. |
ex |
the multiplying parameter to change the leaf lengths. It is set at 0.5 by default. |
Value
The function produces a phylogeny having the same backbone of the original one.
Author(s)
Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Examples
data("DataApes")
DataApes$Tstage->Tstage
makeFossil(tree=Tstage)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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