pointStress: Get individual point stress

In Racmacs: Antigenic Cartography Macros

Get individual point stress

Description

Functions to get stress associated with individual points in a map.

Usage

agStress(map, antigens = TRUE, optimization_number = 1)

srStress(map, sera = TRUE, optimization_number = 1)

srStressPerTiter(map, sera = TRUE, optimization_number = 1)

agStressPerTiter(map, antigens = TRUE, optimization_number = 1)

Arguments

map	The acmap data object
antigens	Which antigens to check stress for, specified by index or name (defaults to all antigens).
optimization_number	The optimization number
sera	Which sera to check stress for, specified by index or name (defaults to all sera).

Value

A numeric vector of point stresses

See Also

See mapStress() for getting the total map stress directly.

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), recalculateStress(), stressTable(), tableColbases(), tableDistances()

Racmacs documentation built on June 22, 2024, 11:33 a.m.