read.acmap | R Documentation |
Reads an antigenic map file and converts it into an acmap data object.
read.acmap(
filename,
optimization_number = NULL,
sort_optimizations = FALSE,
align_optimizations = FALSE
)
filename |
Path to the file. |
optimization_number |
Numeric vector of optimization runs to keep, the default, NULL, keeps information on all optimization runs |
sort_optimizations |
Should optimizations be sorted in order of stress when the map data is read? |
align_optimizations |
Should optimizations be rotated and translated to match the orientation of the first optimization as closely as possible? |
Returns the acmap data object.
Other functions for working with map data:
acmap()
,
addOptimization()
,
agReactivityAdjustments()
,
as.json()
,
edit_agNames()
,
edit_srNames()
,
keepBestOptimization()
,
keepSingleOptimization()
,
layerNames()
,
orderPoints
,
read.titerTable()
,
removePoints
,
save.acmap()
,
save.coords()
,
save.titerTable()
,
subsetCommonPoints
,
subsetMap()
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