recalculateStress: Recalculate the stress associated with an acmap optimization

In Racmacs: Antigenic Cartography Macros

Recalculate the stress associated with an acmap optimization

Description

Recalculates the stress associated with the currently selected or user-specified optimization.

Usage

recalculateStress(map, optimization_number = 1)

Arguments

map	The acmap data object
optimization_number	The optimization number

Value

Returns the recalculated map stress for a given optimization

See Also

See pointStress() for getting the stress of individual points.

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), pointStress, stressTable(), tableColbases(), tableDistances()

Racmacs documentation built on June 22, 2024, 11:33 a.m.