relaxMap | R Documentation |
Optimize antigen and serum positions starting from their current coordinates in the selected or specified optimization.
relaxMap(
map,
optimization_number = 1,
fixed_antigens = FALSE,
fixed_sera = FALSE,
titer_weights = NULL,
options = list()
)
map |
The acmap object |
optimization_number |
The optimization number to relax |
fixed_antigens |
Antigens to set fixed positions for when relaxing |
fixed_sera |
Sera to set fixed positions for when relaxing |
titer_weights |
An optional matrix of weights to assign each titer when optimizing |
options |
List of named optimizer options, see |
Returns an acmap object with the optimization relaxed.
See optimizeMap()
for performing new optimization runs from random
starting coordinates.
Other map optimization functions:
RacOptimizer.options()
,
make.acmap()
,
moveTrappedPoints()
,
optimizeMap()
,
randomizeCoords()
,
relaxMapOneStep()
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