tableColbases: Calculate column bases for a titer table

In Racmacs: Antigenic Cartography Macros

Calculate column bases for a titer table

Description

For more information on column bases, what they mean and how they are calculated see vignette("intro-to-antigenic-cartography")

Usage

tableColbases(
  titer_table,
  minimum_column_basis = "none",
  fixed_column_bases = rep(NA, ncol(titer_table)),
  ag_reactivity_adjustments = rep(0, nrow(titer_table))
)

Arguments

titer_table	The titer table
minimum_column_basis	The minimum column basis to assume
fixed_column_bases	Fixed column bases to apply
ag_reactivity_adjustments	Reactivity adjustments to apply on a per-antigen basis

Value

Returns a numeric vector of the log-converted column bases for the table

See Also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableDistances()

Racmacs documentation built on June 22, 2024, 11:33 a.m.