tableDistances: Return calculated table distances for an acmap

In Racmacs: Antigenic Cartography Macros

Return calculated table distances for an acmap

Description

Takes the acmap object and, assuming the column bases associated with the currently selected or specified optimization, returns the table distances calculated from the titer data. For more information on column bases and their role in antigenic cartography see vignette("intro-to-antigenic-cartography")

Usage

tableDistances(map, optimization_number = 1)

Arguments

map	The acmap data object
optimization_number	The optimization number

Value

Returns a matrix of numeric table distances

See Also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableColbases()

Racmacs documentation built on June 22, 2024, 11:33 a.m.