Man pages for RevEcoR
Reverse Ecology Analysis on Microbiome
| anno.species | Annotation profiles of seven well-studied oral species |
| calculateCooperationIndex | Calculating the metabolic competition and complementarity... |
| compose | Compose multiple functions |
| confidencescore-methods | Conficence score |
| getGsMN-methods | The genome scale metabolic network |
| getOrgMetabolicData | Get organism metabolic data from KEGG database |
| getSeedSets | Identify seed compounds of each organism |
| gut_microbiome | Annotation profiles of 116 gut prevalent species |
| Interactions | Calculating the species interactions |
| kegg_buc | Metabolic profiles of KEGG organism Buchnera aphidicola APS... |
| kegg_ptr | Metabolic profiles of KEGG organism Pan troglodytes... |
| KosarajuSCC | Caculating the strong connected components (SCC) of a network |
| len-methods | the length of the seed set |
| nonseed-methods | Non seed of the network |
| reconstructGsMN | Reconstuction of the specific-organism genome-scale metabolic... |
| RefDbcache | Reference data for global metabolic construction The... |
| RevEcoR | The RevEcoR package |
| seedset-class | 'seedset-class' |
| seedSize-methods | Size of the each seed source component |
| show-methods | The show generic function |
