gut_microbiome: Annotation profiles of 116 gut prevalent species

In RevEcoR: Reverse Ecology Analysis on Microbiome

Description

A dataset containing the the KEGG orthology annotation profiles of 116 gut prevlent species which was downloaded from the Integrated Microbial Genomes (IMG).

Format

A list with 116 elements and each elements represents the annotation profile of the species

Details

This dataset focused on a list of 116 prevalent gut species, whose genome sequence is available in IMG database and sequence coverage is more than 1 annotation profiles of this 116 species was collected from IMG database.

With a in-house R script, we obtained genomic data for all organisms from the Department of Integrated Microbial Genomes project (IMG). For each species, the list of genes mapped to the Kyoto Encyclopedia of Genes and Genomes orthologous groups (KEGG KOs) was downloaded. For more annotation information on these species, see img.jgi.doe.gov/.

Source

img.jgi.doe.gov/

RevEcoR documentation built on May 2, 2019, 1:06 p.m.