anno.species: Annotation profiles of seven well-studied oral species

In RevEcoR: Reverse Ecology Analysis on Microbiome

Description

A dataset containing the the KEGG orthology annotation profiles of seven oral species which was downloaded from the Integrated Microbial Genomes (IMG).

Format

A list with seven elements and each elements represents the annotation profile of the species

Details

This datasets constains the KEGG orthology annotation information of seven oral species whose interactions were carefully and well characterized. The human oral microbiota is relatively #' well described. The name of these seven species is: Aggregatibacter, actinomycetemcomitans D7S-1, Fusobacterium nucleatum polymorphum ATCC 10953, Porphyromonas gingivalis ATCC 33277, Streptococcus gordonii str. Challis substr. CH1, Streptococcus oralis SK23, ATCC 35037, Veillonella atypica ACS-134-V-Col7a. For more annotation information on these species, see img.jgi.doe.gov/.

• Aa, Aggregatibacter actinomycetemcomitans D7S-1

• Ao, Actinomyces oris K20

• Fn, Fusobacterium nucleatum polymorphum ATCC 10953

• Pg, Porphyromonas gingivalis ATCC 33277

• Sg, Streptococcus gordonii str. Challis substr. CH1

• So, Streptococcus oralis SK23, ATCC 35037

• Va, Veillonella atypica ACS-134-V-Col7a

Source

img.jgi.doe.gov/

Examples

data(anno.species)

Example output

RevEcoR documentation built on May 2, 2019, 1:06 p.m.