getOrgMetabolicData: Get organism metabolic data from KEGG database

In RevEcoR: Reverse Ecology Analysis on Microbiome

Description

This function helps us to obtain the specific-organism pathway map, prasing this maps to get metabolic data contains reaction, substrate and product.

Usage

getOrgMetabolicData(org)

Arguments

org,	characters, the KEGG organism code, e.g. "buc".

Details

Function getOrgMetabolicData helps us to download metabolic data of a given organism from KEGG database with REST-style KEGG API. Enzyme reactions take place in this organism (org) and its metabolites (substrates and products), that will be used for organism-specific genome scale metabolic network reconstruction, can be obtained with this function.

Value

a three length df, consists of enzyme reaction names, substrates and products

See Also

getSeedSets

Examples

## Not run: 
metabolic.data <- getOrgMetabolicData("buc")

## End(Not run)

RevEcoR documentation built on May 2, 2019, 1:06 p.m.