Man pages for Rsampletrees
MCMC Sampling of Gene Genealogies Conditional on Genetic Data
| addTrees | Read in trees and add them to the tree output object |
| addTreeStats | Add tree statistics to a treeoutput object |
| changeArgs.treeoutput | Modify the settings stored in a sampletrees treeoutput object |
| checkArgs | Error checking for the arguments to sampletrees |
| estimateHap | Estimate and write haplotype probabilities and initial values... |
| launch.sampletrees | Launches the c++ sampletrees program using arguments... |
| merge.treeoutput | Merge the results from two runs of sampletrees |
| newArgs | Create or modify a sampletrees settings object |
| pkg-internal | Internal use functions. |
| plot.treeoutput | Plot selected output of a sampletrees run |
| print.pars | Nice display of tags and values of a sampletrees settings... |
| print.treeoutput | Nice display of a treeoutput object |
| readArgs | Read arguments for a sampletrees run from a settings file |
| readOutput | Read in sampletrees output |
| readTrees | Read in trees from a run of sampletrees. |
| restartRun | Set up a settings object for continuing a previous... |
| Rsampletrees-package | MCMC sampling of gene genealogies conditional on genetic data |
