Man pages for RxODE
Facilities for Simulating from ODE-Based Models

add.dosingAdd dosing to eventTable
add.samplingAdd sampling to eventTable
as.etCoerce object to data.frame
coef.RxODEReturn the RxODE coefficients
cvPostSample a covariance Matrix from the Posterior Inverse Wishart...
dot-clearPipeClear/Set pipeline
dot-rxGenFoceGenerate FOCE without interaction
dot-rxWithOptionsTemporarily set options then restore them while running code
dot-rxWithSinkWith one sink, then release
dot-rxWithWdTemporarily set options then restore them while running code
dot-s3registerRegister a method for a suggested dependency
dot-setWarnIdSortTurn on/off warnings for ID sorting.
etEvent Table Function
etExpandExpand additional doses
etRbindCombining event tables
etRepRepeat an RxODE event table
etSeqSequence of event tables
etTransEvent translation for RxODE
eventTableCreate an event table object
findLhsFind the assignments in R expression
forderForceBaseForce using base order for RxODE radix sorting
gammapGammap: normalized lower incomplete gamma function
gammapDergammapDer: derivative of gammap
gammapInvgammapInv and gammapInva: Inverses of normalized gammap...
gammaqGammaq: normalized upper incomplete gamma function
gammaqInvgammaqInv and gammaqInva: Inverses of normalized gammaq...
genShinyApp.templateGenerate an example (template) of a dosing regimen shiny app
getRxThreadsGet/Set the number of threads that RxODE uses
guide_noneEmpty Guide
invWR1dOne correlation sample from the Inverse Wishart distribution
is.rxEtCheck to see if this is an rxEt object.
is.rxSolveCheck to see if this is an rxSolve object.
logitlogit and inverse logit (expit) functions
lowergammalowergamma: upper incomplete gamma function
phiCumulative distribution of standard normal
plus-.rxSolveUpdate Solved object with '+'
print.rxCoefPrint the rxCoef object
print.rxDllPrint rxDll object
print.RxODEPrint information about the RxODE object.
probitprobit and inverse probit functions
reexportsObjects exported from other packages
rinvchisqScaled Inverse Chi Squared distribution
rLKJ1One correlation sample from the LKJ distribution
rxAllowUnloadAllow unloading of dlls
rxAssignPtrAssign pointer based on model variables
rxbetaSimulate beta variable from threefry generator
rxbinomSimulate Binomial variable from threefry generator
rxBlockZerosCreates a logical matrix for block matrixes.
rxCReturn the C file associated with the RxODE object
rxCatUse cat when RxODE.verbose is TRUE
rxcauchySimulate Cauchy variable from threefry generator
rxCbindStudyIndividualBind the study parameters and individual parameters
rxChainrxChain Chain or add item to solved system of equations
rxChain2Second command in chaining commands
rxchisqSimulate chi-squared variable from threefry generator
rxCleanCleanup anonymous DLLs by unloading them
rxCompileCompile a model if needed
rxConditionCurrent Condition for RxODE object
rxCreateCacheThis will create the cache directory for RxODE to save...
rxDAdd to RxODE's derivative tables
rxDeleteDelete the DLL for the model
rxDerivedCalculate derived parameters for the 1-, 2-, and 3-...
rxDfdyJacobian and parameter derivatives
rxDllReturn the DLL associated with the RxODE object
rxDynLoadLoad RxODE object
rxDynUnloadUnload RxODE object
rxEvidEVID formatting for tibble and other places.
rxexpSimulate exponential variable from threefry generator
rxExpandGridFaster expand.grid
rxExpandIfElseExpand if/else clauses into mutiple different types of lines.
rxfSimulate F variable from threefry generator
rxForgetClear memoise cache for RxODE
rxFunAdd user function to RxODE
rxgammaSimulate gamma variable from threefry generator
rxGenSaemGenerate pred-only SAEM RxODE model
rxgeomSimulate geometric variable from threefry generator
rxGetLinGet the linear compartment model true function
rxGetModelGet model properties without compiling it.
rxGetRxODEGet RxODE model from object
rxHtmlFormat rxSolve and related objects as html.
rxIndLinStateSet the preferred factoring by state
rxIndLinStrategyThis sets the inductive linearization strategy for matrix...
rxInitsInitial Values and State values for a RxODE object
rxInvInvert matrix using RcppArmadillo.
rxIsCheck the type of an object using Rcpp
rxIsCurrentChecks if the RxODE object was built with the current build
rxIsLoadedDetermine if the DLL associated with the RxODE object is...
rxLhsLeft handed Variables
rxLockLock/unlocking of RxODE dll file
rxMd5Return the md5 of an RxODE object or file
rxModels_Get the rxModels information
rxModelVarsAll model variables for a RxODE object
rxNormGet the normalized model
rxnormVSimulate random normal variable from threefry/vandercorput...
RxODECreate an ODE-based model specification
rxodeTestWrap a test in RxODE
rxOptExprOptimize RxODE for computer evaluation
rxParamsParameters specified by the model
rxParseErrPrepare Error function for inclusion in RxODE
rxParsePkParse PK function for inclusion in RxODE
rxParsePredPrepare Pred function for inclusion in RxODE
rxPhysicalDrivesReturns a list of physical drives that have been or currently...
rxPkgCreates a package from compiled RxODE models
rxpoisSimulate random Poisson variable from threefry generator
rxPpSimulate a from a Poisson process
rxProgressRxODE progress bar functions
rxPrunePrune branches (ie if/else) from RxODE
rxRandNVCreate a random "normal" matrix using vandercorput generator
rxRateDurCreates a rxRateDur object
rxReloadReload RxODE DLL
rxReqRequire namespace, otherwise throw error.
rxReservedKeywordsA list and description of Rode supported reserved keywords
rxRmvnSimulate from a (truncated) multivariate normal
rxSLoad a model into a symengine environment
rxSEinnerSetup Pred function based on RxODE object.
rxSetIni0Set Initial conditions to time zero instead of the first...
rxSetProdDefunct setting of product
rxSetProgressBarSet timing for progress bar
rxSetSeedSet the parallel seed for RxODE random number generation
rxSetSilentErrSilence some of RxODE's C/C++ messages
rxSetSumDefunct setting of sum
rxSetupIniSetup the initial conditions.
rxSetupScaleSetup the initial conditions.
rxShinyUse Shiny to help develop an RxODE model
rxSimThetaOmegaSimulate Parameters from a Theta/Omega specification
rxSolveSolving & Simulation of a ODE/solved system (and solving...
rxSolveFreeFree the C solving/parsing information.
rxSplitPlusQThis function splits a function based on + or - terms
rxStackStack a solved object for things like ggplot
rxStateState variables
rxSumProdModelRecast model in terms of sum/prod
rxSupportedFunsGet list of supported functions
rxSuppressMsgRespect suppress messages
rxSymInvCholGet Omega^-1 and derivatives
rxSymInvCholCreateCreates an object for calculating Omega/Omega^-1 and...
rxSymInvCholNReturn the dimension of the built-in derivatives/inverses
rxSyncOptionsSync options with RxODE variables
rxSyntaxFunctionsA list and description of Rode supported syntax functions
rxtSimulate student t variable from threefry generator
rxTempDirGet the RxODE temporary directory
rxThemerxTheme is the RxODE theme for plots
rxToSERxODE to symengine environment
rxTransTranslate the model to C code if needed
rxunifSimulate uniform variable from threefry generator
rxUnloadAllUnloads all RxODE compiled DLLs
rxUseUse model object in your package
rxValidateValidate RxODE This allows easy validation/qualification of...
rxVersionVersion and repository for this dparser package.
rxweibullSimulate Weibull variable from threefry generator
rxWinSetupSetup Windows components for RxODE
stat_amtDosing/Amt geom/stat
stat_censCensoring geom/stat
summary.rxDllSummary of rxDll object
summary.RxODEPrint expanded information about the RxODE object.
uppergammauppergamma: upper incomplete gamma function
RxODE documentation built on March 23, 2022, 9:06 a.m.