SADEG.CAI: SADEG.CAI
In SADEG: Stability Analysis in Differentially Expressed Genes
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Codon Adaption Index
Usage
1
SADEG.CAI(Nucleotide_Sequence)
Arguments
Nucleotide_Sequence
Nucleotide Sequence
Details
Geometric mean of the RSCU values presented as relative adaptiveness value (w), The CAI for a gene is then defined as the geometric mean of w values for codons in that gene excluding methionine, tryptophan, and stop codons.
Value
CAI
Author(s)
Babak Khorsand
Examples
1
SADEG.CAI(Nucleotide_Sequence="atggctgctgcagcggccagtcacgatcagaggtaagttgtcgcagcatgt")
Example output
CAI
0.8407065
SADEG documentation built on May 2, 2019, 6:54 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Codon Adaption Index
Usage
1 | SADEG.CAI(Nucleotide_Sequence)
|
Arguments
Nucleotide_Sequence |
Nucleotide Sequence |
Details
Geometric mean of the RSCU values presented as relative adaptiveness value (w), The CAI for a gene is then defined as the geometric mean of w values for codons in that gene excluding methionine, tryptophan, and stop codons.
Value
CAI
Author(s)
Babak Khorsand
Examples
1 | SADEG.CAI(Nucleotide_Sequence="atggctgctgcagcggccagtcacgatcagaggtaagttgtcgcagcatgt")
|
Example output
CAI
0.8407065
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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