SADEG.CodonUsage: SADEG.CodonUsage

In SADEG: Stability Analysis in Differentially Expressed Genes

Description

Frequency of occurrence of each Amino acids codons.

Usage

SADEG.CodonUsage(Nucleotide_Sequence)

Arguments

Nucleotide_Sequence

Nucleotide Sequence

Details

Frequency of occurrence of each Amino acids codons.

Value

CodonUsage

Author(s)

Babak Khorsand

Examples

SADEG.CodonUsage(Nucleotide_Sequence="atggctgcagcggccagtcacgatcagaggtaagttgtc")

Example output

 GCT  GCC  GCA  GCG  CGT  CGC  CGA  CGG  AGA  AGG  AAT  AAC  GAT  GAC  TGT  TGC 
0.25 0.25 0.25 0.25 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.00 0.00 0.00 0.00 
 CAA  CAG  GAA  GAG  GGT  GGC  GGA  GGG  CAT  CAC  ATT  ATC  ATA  TTA  TTG  CTT 
0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 
 CTC  CTA  CTG  AAA  AAG  ATG  TTT  TTC  CCT  CCC  CCA  CCG  TCT  TCC  TCA  TCG 
0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 
 AGT  AGC  ACT  ACC  ACA  ACG  TGG  TAT  TAC  GTT  GTC  GTA  GTG  TAA  TGA  TAG 
1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.50 0.00 0.00 1.00 0.00 0.00 

SADEG documentation built on May 2, 2019, 6:54 a.m.