SADEG.RSCU: SADEG.RSCU

In SADEG: Stability Analysis in Differentially Expressed Genes

Description

Relative Synonymous Codon Usage

Usage

SADEG.RSCU(Nucleotide_Sequence)

Arguments

Nucleotide_Sequence

Nucleotide Sequence

Details

The Relative Synonymous Codon Usage (RSCU) is the number of times a codon appears in a gene divided by the number of expected occurrences under equal codon usage.

Value

RSCU

Author(s)

Babak Khorsand

Examples

SADEG.RSCU(Nucleotide_Sequence="atggctgcagcggccagtcacgatcagaggtaagttgtc")

Example output

GCT GCC GCA GCG CGT CGC CGA CGG AGA AGG AAT AAC GAT GAC TGT TGC CAA CAG GAA GAG 
  1   1   1   1   0   0   0   0   0   6   0   0   2   0   0   0   0   2   0   0 
GGT GGC GGA GGG CAT CAC ATT ATC ATA TTA TTG CTT CTC CTA CTG AAA AAG ATG TTT TTC 
  0   0   0   0   0   2   0   0   0   0   0   0   0   0   0   0   0   1   0   0 
CCT CCC CCA CCG TCT TCC TCA TCG AGT AGC ACT ACC ACA ACG TGG TAT TAC GTT GTC GTA 
  0   0   0   0   0   0   0   0   6   0   0   0   0   0   0   0   0   2   2   0 
GTG TAA TGA TAG 
  0   3   0   0 

SADEG documentation built on May 2, 2019, 6:54 a.m.