API for SATS
Signature Analyzer for Targeted Sequencing (SATS)
| Global functions | |
|---|---|
| CalculateSignatureBurdens | Man page Source code |
| EstimateSigActivity | Man page Source code |
| GenerateLMatrix | Man page Source code |
| GeneratePanelSize | Man page Source code |
| GeneratePanelSize_DBS | Source code |
| GeneratePanelSize_SBS | Source code |
| GenerateVMatrix | Man page Source code |
| GenerateVMatrix_DBS | Source code |
| GenerateVMatrix_SBS | Source code |
| L_matrix_generation | Source code |
| MappingSignature | Man page Source code |
| ReadBEDAsPanelInfo | Man page Source code |
| ReadVCFAsMutationRecord | Man page Source code |
| RefTMB | Man page |
| SATS | Man page |
| SimData | Man page |
| ValidateSATSInputs | Man page Source code |
| align_L_W_H | Source code |
| align_L_W_V | Source code |
| align_named_axis | Source code |
| check_COSMICv | Source code |
| check_Class | Source code |
| check_L_W_H | Source code |
| check_L_W_V | Source code |
| check_Panel_context | Source code |
| check_Patient_Info | Source code |
| check_Types | Source code |
| check_axis_if_present | Source code |
| check_axis_names | Source code |
| check_clinical_sample | Source code |
| check_estSigActivity_output | Source code |
| check_genomic_info | Source code |
| check_mat_df | Source code |
| check_mutation_order | Source code |
| check_mutation_record | Source code |
| check_number | Source code |
| check_ref.genome | Source code |
| check_sats_numeric_matrix | Source code |
| check_sig_burdens_output | Source code |
| classify_vcf_variant | Source code |
| drop_invalid_mutations | Source code |
| estSigAct_main | Source code |
| extract_table_column | Source code |
| filt1 | Source code |
| format_name_list | Source code |
| get_W_ref | Source code |
| get_axis_names | Source code |
| get_default_mutation_order | Source code |
| get_ref_tmb | Source code |
| get_reference_genome | Source code |
| guess_sample_id_from_file | Source code |
| isString | Source code |
| is_genomic_info_input | Source code |
| make_count_matrix | Source code |
| prepare_mutation_record | Source code |
| read_tab_file | Source code |
| read_text_lines | Source code |
| reorder_axis | Source code |
| rev_dinucleotide | Source code |
| sats_seqnames | Source code |
| setNames_H | Source code |
| sigExp_setReturn | Source code |
| standardize_Patient_Info | Source code |
| validate_sats_inputs | Source code |
