Man pages for SATS
Signature Analyzer for Targeted Sequencing (SATS)
| CalculateSignatureBurdens | Calculate signature burdens |
| EstimateSigActivity | Estimate signature activity |
| GenerateLMatrix | Generate a sample-level panel-context matrix |
| GeneratePanelSize | Generate a panel-context matrix |
| GenerateVMatrix | Generate a Mutation Count Matrix from Mutation Records |
| MappingSignature | Find a subset of TMB-based catalog SBS signatures |
| ReadBEDAsPanelInfo | Convert BED Target Regions to SATS Panel Information |
| ReadVCFAsMutationRecord | Convert a Simple VCF File to a SATS Mutation Record Table |
| RefTMB | Example Data |
| SATS-package | SATS (Signature Analyzer for Targeted Sequencing) |
| SimData | Simulated example data |
| ValidateSATSInputs | Validate SATS input matrices |
