Description Usage Format Source References Examples
This data set includes the Profile scoring matrix derived from the training set compiled from the CC+ coiled-coil database. It is used as the default PSSM used by SCORER 2.0 when predicting the oligomeric state of coiled-coil sequences. More details on the training set can be found in the reference below.
1 |
A multi-dimensional array with 7 element, each of dimension 2x21.
DOI: 10.1093/bioinformatics/btr299.
Craig T. Armstrong, Thomas L. Vincent, Peter J. Green and Dek N. Woolfson. (2011) SCORER 2.0: an algortihm for distinguishing parallel dimeric and trimeric coiled-coil sequences. Bioinformatics. DOI: 10.1093/bioinformatics/btr299
1 2 |
, , a
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 31 9 4 16 18 1 8 74 29 136 14 50 1 10 21 11 18 79 0 12 1
TRIMER 5 0 0 2 5 1 1 40 0 44 5 3 1 4 2 2 3 28 1 2 1
, , b
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 56 5 42 75 10 9 6 11 52 18 7 20 3 40 35 32 24 17 1 15 0
TRIMER 21 1 14 16 0 4 1 1 10 7 0 7 0 14 12 14 4 5 0 3 0
, , c
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 33 2 29 78 10 12 15 14 44 27 10 19 3 54 40 25 27 20 2 12 2
TRIMER 21 0 15 18 2 2 4 1 10 7 0 9 0 13 6 9 9 6 0 2 0
, , d
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 38 10 2 13 10 0 3 20 20 277 21 6 0 11 16 21 17 19 7 14 5
TRIMER 10 0 0 2 2 0 3 25 1 67 5 9 0 6 2 3 3 9 0 1 1
, , e
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 31 1 20 90 12 3 6 16 59 42 9 10 0 50 38 18 26 13 4 8 5
TRIMER 5 0 9 33 0 3 1 2 14 7 3 11 1 14 11 11 5 5 1 1 0
, , f
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 48 3 41 77 4 18 11 7 52 29 6 29 1 29 36 26 23 15 1 5 0
TRIMER 11 0 11 19 0 6 1 1 17 5 0 6 0 14 7 20 11 3 1 1 0
, , g
A C D E F G H I K L M N P Q R S T V W Y X
DIMER 27 3 12 107 4 3 5 15 64 47 10 7 0 53 38 17 16 19 1 11 1
TRIMER 10 1 12 14 0 3 3 5 21 5 2 11 0 9 18 10 5 3 0 3 0
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