SDDE: Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks
Version 1.0.1

Compares the evolution of an original network X to an augmented network Y by counting the number of Shortcuts, Detours, Dead Ends (SDDE), equal paths and disconnected nodes.

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AuthorEtienne Lord, Margaux Le Cam, Eric Bapteste, Vladimir Makarenkov and Francois-Joseph Lapointe
Date of publication2015-08-26 23:23:36
MaintainerEtienne Lord <m.etienne.lord@gmail.com>
LicenseGPL-3
Version1.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SDDE")

Man pages

complete_network: compare two given networks (original and augmented, presented...
complete_restart: compares two given networks (original and augmented,...
complete_trace: return properties of a single path in two given networks...
Eukaryote_nonphoto: An original and an augmented real genomic networks
Eukaryote_photo: An original and an augmented real genomic networks
g1: generic name for network X
g2: generic name for network Y
info_network: returns additional information regarding the networks X and Y...
info_node: returns additional information regarding the nodes of...
load_network: is a helper function to load networks from files
Plasmids: An original and an augmented real genomic networks
plot_network: Helper function to display an illustration of a network.
random_network: creates random augmented networks X and Y
Sample_1: An original network X with 11 nodes and an augmented network...
Sample_2: An network X of 6 nodes and an augmented network Y with 7...
sample_network: compares two networks using a path analysis of total pathways
sample_path: is a helper function that creates a vector of non-repeating...
save_network: is an helper function to save an illustration of a network...
save_network_big: Helper function to save an illustration of a network to file...
SDDE-package: Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome...
Version: Version information.
Viruses: An original and an augmented real genomic networks

Functions

Eukaryote_nonphoto Man page
Eukaryote_photo Man page
Plasmids Man page
SDDE Man page
SDDE-package Man page
SDDE.version Man page Source code
Sample_1 Man page
Sample_2 Man page
Viruses Man page
complete_network Man page Source code
complete_restart Man page Source code
complete_trace Man page Source code
g1 Man page
g2 Man page
info_network Man page Source code
info_node Man page Source code
load_network Man page Source code
plot_network Man page Source code
random_network Man page Source code
sample_network Man page Source code
sample_path Man page Source code
save_network Man page Source code
save_network_big Man page Source code

Files

src
src/createSamplePath.c
NAMESPACE
NEWS
data
data/Eukaryote_nonphoto.rda
data/Eukaryote_photo.rda
data/Plasmids.rda
data/Sample_2.rda
data/datalist
data/Sample_1.rda
data/Viruses.rda
R
R/sample_network.R
R/random_network.R
R/version.R
R/complete_network.R
R/complete_network_trace.R
R/load_network.R
R/save_network.R
R/info_network.R
MD5
DESCRIPTION
man
man/g2.Rd
man/Sample_1.Rd
man/load_network.Rd
man/Version.Rd
man/info_node.Rd
man/plot_network.Rd
man/info_network.Rd
man/Plasmids.Rd
man/Viruses.Rd
man/sample_path.Rd
man/complete_restart.Rd
man/complete_network.Rd
man/Eukaryote_nonphoto.Rd
man/SDDE-package.Rd
man/Eukaryote_photo.Rd
man/g1.Rd
man/Sample_2.Rd
man/save_network_big.Rd
man/random_network.Rd
man/sample_network.Rd
man/save_network.Rd
man/complete_trace.Rd
SDDE documentation built on May 19, 2017, 9:20 a.m.