Eukaryote_nonphoto: An original and an augmented real genomic networks

In SDDE: Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks

Description

Those networks are composed of 145 archaea, 181 eubacteria with the addition of 19 non-photosynthetic eukaryotes to illustrate the functions of this package.

Usage

data(Eukaryote_nonphoto)

Format

A data frame with the following 2 variables:

g1

An original igraph network

g2

An augmented igraph network

Examples

## Not run: 
data(Eukaryote_nonphoto)
info_network(g1,g2)

## End(Not run)
## Network characteristics:
## Total of new nodes in network Y: 19 
## Number of edges in network Y: 1845 
## Number of nodes in network Y: 345 
## Number of nodes in network X: 326 
## Total of pathways to investigate: 52975 
## Clustering coefficient network Y: 0.8655372 
## Clustering coefficient network X: 0.8643119 
## Average degree + std in network Y: 10.69565 + 8.366434 
## Average degree + std in network X: 10.45399 + 8.502816 
## Average path length in network Y: 5.287595 
## Average path length in network X: 4.915441 
## Number of clusters in network Y: 22 
## Number of clusters in network X: 22 
## Average cluster size + std in network Y: 15.68182 + 28.92583 
## Average cluster size + std in network X: 14.81818 + 25.1711 
## Nodes distribution in network Y (first row taxa, second row count):
##           archaea         eubacteria eukaryote_nonphoto 
##               145                181                 19 

SDDE documentation built on May 1, 2019, 9:01 p.m.