Description Usage Arguments Value Examples
This function returns some additional information regarding the nodes of networks X and Y such as the reachability of nodes in networks X to the augmented nodes of network Y.
1 |
g1 |
the original network X |
g2 |
the augmented network Y with additional nodes (all the original nodes from X must be present in the augmented network Y) |
taxnames |
the taxon name of the nodes added to the original graph (default: we select all nodes that are not in g1) |
maxnode |
the maximum number of augmented nodes in network Y to take into account (default=0, no maximum number of augmented nodes to take into account. The augmented nodes are sorted by distance to the investigated node pairs by the algorithm.) |
maxdistance |
the maximum search distance to the added nodes in network Y (default=0, no maximum distance for augmented nodes to take into account) |
This function return information about the reachability of each node such as : reach_count(number of reachable augmented nodes), reach_max_dist (maximal distance to an augmented node), reach_min_dist (minimal distance to an augmented node), reach_mean_dist (mean distance to augmented nodes)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | ## Report reachability informations about the node in sample1
## Not run:
data(Sample_1)
info_node(g1,g2)
## End(Not run)
## Results:
## Total of pathways to investigate: 55
## Number of edges in network Y: 17
## Number of nodes in network Y: 14
## Number of nodes in network X: 11
## Nodes distribution in network Y (first row taxa, second row count):
## 1 2
## 11 3
## $reach_count
## [1] 3 3 3 3 3 3 0 3 3 0 3 3 3 3 3 0 3 3 0 3 3 3 3 0 3 3 0 0 3 3 0 3 3 0 3 3 0 3
## [39] 3 0 3 0 3 3 0 0 3 3 0 0 0 0 3 0 0
## $reach_max_dist
## [1] 3 3 3 3 3 1 0 3 1 0 3 3 3 1 1 0 3 1 0 3 3 3 3 0 3 3 0 0 3 1 0 3 1 0 3 1 0 3
## [39] 1 0 1 0 3 1 0 0 1 1 0 0 0 0 1 0 0
## $reach_min_dist
## [1] 2 1 2 2 2 2 0 2 2 0 1 1 1 2 3 0 2 3 0 1 1 1 2 0 1 2 0 0 2 2 0 2 2 0 2 2 0 2
## [39] 2 0 2 0 2 2 0 0 2 2 0 0 0 0 2 0 0
## $reach_mean_dist
## [1] 2 2 2 2 2 2 0 2 2 0 2 2 2 2 2 0 2 2 0 2 2 2 2 0 2 2 0 0 2 2 0 2 2 0 2 2 0 2
## [39] 2 0 2 0 2 2 0 0 2 2 0 0 0 0 2 0 0
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