Eukaryote_photo: An original and an augmented real genomic networks

In SDDE: Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks

Description

Those networks are composed of 145 archaea, 181 eubacteria with the addition of 19 photosynthetic eukaryotes to illustrate the functions of this package.

Usage

data(Eukaryote_photo)

Format

A data frame with the following 2 variables:

g1

An original igraph network

g2

An augmented igraph network

Examples

## Not run: 
data(Eukaryote_photo)
info_network(g1,g2)

## End(Not run)
## Network characteristics:
## Total of new nodes in network Y: 19 
## Number of edges in network Y: 2014 
## Number of nodes in network Y: 345 
## Number of nodes in network X: 326 
## Total of pathways to investigate: 52975 
## Clustering coefficient network Y: 0.866758 
## Clustering coefficient network X: 0.8643119 
## Average degree + std in network Y: 11.67536 + 9.600091 
## Average degree + std in network X: 10.45399 + 8.502816 
## Average path length in network Y: 5.972801 
## Average path length in network X: 4.915441 
## Number of clusters in network Y: 21 
## Number of clusters in network X: 22 
## Average cluster size + std in network Y: 16.42857 + 32.51857 
## Average cluster size + std in network X: 14.81818 + 25.1711 
## Nodes distribution in network Y (first row taxa, second row count):
##        archaea      eubacteria eukaryote_photo 
##            145             181              19 

SDDE documentation built on May 1, 2019, 9:01 p.m.