addSamplesToBg: Add Samples to Background

In SDMtune: Species Distribution Model Selection

Add Samples to Background

Description

The function add the presence locations to the background. This is equivalent to the Maxent argument addsamplestobackground=true.

Usage

addSamplesToBg(x, all = FALSE)

Arguments

x	SWD object.
all	logical. If TRUE it adds all the presence locations even if already included in the background locations. This is equivalent to the Maxent argument addallsamplestobackground=true.

Value

An object of class SWD.

Author(s)

Sergio Vignali

Examples

# Acquire environmental variables
files <- list.files(path = file.path(system.file(package = "dismo"), "ex"),
                    pattern = "grd",
                    full.names = TRUE)

predictors <- terra::rast(files)

# Prepare presence and background locations
p_coords <- virtualSp$presence
bg_coords <- virtualSp$background

# Create SWD object
data <- prepareSWD(species = "Virtual species",
                   p = p_coords,
                   a = bg_coords,
                   env = predictors,
                   categorical = "biome")
data

# Add presence locations with values not included in the backgrounds to the
# background locations
new_data <- addSamplesToBg(data)
new_data

# Add all the presence locations to the background locations, even if they
# have values already included in the backgrounds
new_data <- addSamplesToBg(data,
                           all = TRUE)
new_data

SDMtune documentation built on July 9, 2023, 6:03 p.m.