Files in SDMtune
Species Distribution Model Selection

MD5
NEWS.md README.md
LICENSE.note
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/sysdata.rda
R/thresholds.R R/predict-Maxent.R R/trainValTest.R R/Maxent-class.R R/maxentVarImp.R R/train.R R/mergeSWD.R R/modelReport.R R/reduceVar.R R/predict-BRT.R R/plotResponse.R R/auc.R R/chart-utils.R R/trainRF.R R/trainBRT.R R/combineCV.R R/SDMmodel-class.R R/plotVarImp.R R/virtualSp.R R/doJk.R R/predict-Maxnet.R R/convertFolds.R R/confMatrix.R R/predict-RF.R R/predict-SDMmodel.R R/checkMaxentInstallation.R R/swd2csv.R R/ANN-class.R R/corVar.R R/randomFolds.R R/optimizeModel.R R/varSel.R R/trainMaxent.R R/maxentTh.R R/SDMmodelCV-class.R R/Maxnet-class.R R/SDMmodel2MaxEnt.R R/predict-ANN.R R/randomSearch.R R/RF-class.R R/SWD-class.R R/prepareSWD.R R/plotROC.R R/SDMtune-class.R R/plotJk.R R/trainANN.R R/zzz.R R/varImp.R R/trainMaxnet.R R/SDMtune-package.R R/plotPred.R R/predict-SDMmodelCV.R R/BRT-class.R R/tss.R R/plotCor.R R/getTunableArgs.R R/thinData.R R/addSamplesToBg.R R/plotPA.R R/aicc.R R/utils.R R/gridSearch.R
src/RcppExports.cpp
src/utils.cpp
inst/CITATION
inst/WORDLIST
inst/doc/basic-use.R
inst/doc/var-selection.html
inst/doc/presence-absence.html
inst/doc/basic-use.Rmd inst/doc/presence-absence.R
inst/doc/hyper-tuning.html
inst/doc/basic-use.html
inst/doc/hyper-tuning.R inst/doc/hyper-tuning.Rmd inst/doc/var-selection.R inst/doc/var-selection.Rmd inst/doc/presence-absence.Rmd
inst/lib/Chart.min.js
inst/lib/jquery.min.js
inst/lib/style.css
inst/templates/modelReport.Rmd
inst/templates/report.css
inst/templates/chart_template.html
inst/scripts/gridSearch.js
inst/scripts/varSelection.js
inst/scripts/optimizeModel.js
build/vignette.rds
tests/testthat.R tests/testthat/test-plotPA.R tests/testthat/test-thinData.R tests/testthat/test-plotResponse.R tests/testthat/test-trainValTest.R tests/testthat/test-trainBRT.R tests/testthat/test-varImp.R tests/testthat/test-aicc.R tests/testthat/test-utils.R tests/testthat/test-tss.R tests/testthat/test-mergeSWD.R tests/testthat/test-Maxnet-class.R tests/testthat/test-randomFolds.R tests/testthat/test-modelReport.R tests/testthat/test-plotPred.R tests/testthat/test-addSamplesToBg.R tests/testthat/test-predict-Maxent.R tests/testthat/test-predict-SDMmodelCV.R tests/testthat/test-predict-BRT.R tests/testthat/test-maxentTh.R tests/testthat/test-Maxent-class.R tests/testthat/test-RF-class.R tests/testthat/test-chart-utils.R tests/testthat/test-convertFolds.R tests/testthat/test-ANN-class.R tests/testthat/test-SDMmodel-class.R tests/testthat/test-BRT-class.R tests/testthat/test-predict-ANN.R tests/testthat/test-prepareSWD.R tests/testthat/test-trainANN.R tests/testthat/test-plotJk.R tests/testthat/test-combineCV.R tests/testthat/test-SWD-class.R tests/testthat/test-checkMaxentInstallation.R tests/testthat/test-SDMmodel2MaxEnt.R tests/testthat/test-plotROC.R tests/testthat/helper.R tests/testthat/test-plotCor.R tests/testthat/test-randomSearch.R tests/testthat/test-gridSearch.R tests/testthat/test-varSel.R tests/testthat/test-SDMtune-class.R tests/testthat/test-predct-Maxnet.R tests/testthat/test-corVar.R tests/testthat/test-confMatrix.R tests/testthat/test-trainMaxent.R tests/testthat/test-swd2csv.R tests/testthat/test-doJk.R tests/testthat/test-predict-SDMmodel.R tests/testthat/test-reduceVar.R tests/testthat/test-predict-RF.R tests/testthat/setup.R tests/testthat/test-train.R tests/testthat/test-trainMaxnet.R tests/testthat/test-thresholds.R tests/testthat/test-trainRF.R tests/testthat/test-SDMmodelCV-class.R tests/testthat/test-getTunableArgs.R tests/testthat/test-optimizeModel.R tests/testthat/test-clamp.R tests/testthat/test-maxentVarImp.R tests/testthat/test-auc.R tests/testthat/test-plotVarImp.R tests/testthat/_snaps/RF-class.md tests/testthat/_snaps/corVar.md tests/testthat/_snaps/auc.md tests/testthat/_snaps/gridSearch.md tests/testthat/_snaps/trainValTest.md tests/testthat/_snaps/randomFolds.md tests/testthat/_snaps/maxentVarImp.md tests/testthat/_snaps/Maxnet-class.md tests/testthat/_snaps/optimizeModel.md tests/testthat/_snaps/SWD-class.md tests/testthat/_snaps/SDMmodel2MaxEnt.md tests/testthat/_snaps/SDMmodelCV-class.md tests/testthat/_snaps/ANN-class.md tests/testthat/_snaps/plotPred.md tests/testthat/_snaps/SDMmodel-class.md tests/testthat/_snaps/trainMaxent.md tests/testthat/_snaps/confMatrix.md tests/testthat/_snaps/reduceVar.md tests/testthat/_snaps/varSel.md tests/testthat/_snaps/doJk.md tests/testthat/_snaps/checkMaxentInstallation.md tests/testthat/_snaps/plotPA.md tests/testthat/_snaps/Maxent-class.md tests/testthat/_snaps/tss.md tests/testthat/_snaps/utils.md tests/testthat/_snaps/addSamplesToBg.md tests/testthat/_snaps/predict-SDMmodelCV.md tests/testthat/_snaps/mergeSWD.md tests/testthat/_snaps/thinData.md tests/testthat/_snaps/SDMtune-class.md tests/testthat/_snaps/prepareSWD.md tests/testthat/_snaps/aicc.md tests/testthat/_snaps/modelReport.md tests/testthat/_snaps/maxentTh.md tests/testthat/_snaps/swd2csv.md tests/testthat/_snaps/predict-SDMmodel.md tests/testthat/_snaps/convertFolds.md tests/testthat/_snaps/BRT-class.md tests/testthat/_snaps/plotJk.md
vignettes/SDMtune.bib
vignettes/basic-use.Rmd vignettes/hyper-tuning.Rmd vignettes/var-selection.Rmd vignettes/presence-absence.Rmd vignettes/articles/evaluation-strategies.Rmd vignettes/articles/train-tune-presence-absence-models.Rmd vignettes/articles/prepare-data.Rmd vignettes/articles/variable-importance.Rmd vignettes/articles/evaluate-model.Rmd vignettes/articles/variable-selection.Rmd vignettes/articles/tune-hyperparameters.Rmd vignettes/articles/make-predictions.Rmd vignettes/articles/train-model.Rmd
data/virtualSp.rda
man/auc.Rd man/varImp.Rd man/thresholds.Rd man/SDMmodelCV-class.Rd man/getTunableArgs.Rd man/checkMaxentInstallation.Rd man/modelReport.Rd man/plotVarImp.Rd man/predict-RF-method.Rd man/ANN-class.Rd man/trainValTest.Rd man/plotPred.Rd man/varSel.Rd man/swd2csv.Rd man/SDMmodel2MaxEnt.Rd man/plotROC.Rd man/prepareSWD.Rd man/BRT-class.Rd man/addSamplesToBg.Rd man/optimizeModel.Rd man/corVar.Rd man/maxentVarImp.Rd man/predict-Maxnet-method.Rd man/plotResponse.Rd man/combineCV.Rd man/reduceVar.Rd man/virtualSp.Rd man/mergeSWD.Rd man/aicc.Rd man/Maxent-class.Rd man/plotCor.Rd man/predict-BRT-method.Rd man/train.Rd man/tss.Rd man/randomSearch.Rd man/doJk.Rd man/predict-SDMmodelCV-method.Rd man/plotJk.Rd man/SWD-class.Rd man/SDMtune-class.Rd man/predict-ANN-method.Rd man/SDMtune-package.Rd man/thinData.Rd man/confMatrix.Rd man/randomFolds.Rd man/plotPA.Rd man/Maxnet-class.Rd man/SDMmodel-class.Rd man/gridSearch.Rd man/predict-SDMmodel-method.Rd man/maxentTh.Rd man/predict-Maxent-method.Rd man/RF-class.Rd
man/figures/realtime-chart.gif
man/figures/bench.png
man/figures/logo.png
SDMtune documentation built on July 9, 2023, 6:03 p.m.