`r class(params$model@model)` model for *`r params$model@data@species`*

In SDMtune: Species Distribution Model Selection

options(crayon.enabled = TRUE)

r class(params$model@model) output produced using SDMtune version r packageVersion("SDMtune") (Vignali S. et al., 2020).

.save_report_files(params)

ROC curve

.plot_report_roc(params)

Thresholds

.compute_report_thresholds(params)

r if(!params$response_curves) {"<!--"}

Response curves {#response}

Marginal curves:

.plot_report_response_curves(params, type = "marginal")

Univariate curves:

.plot_report_response_curves(params, type = "univariate")

r if(!params$response_curves) {"-->"}

r if(is.null(params$env)) {"<!--"}

Distribution map

.make_report_prediction(params)

r if(is.null(params$env)) {"-->"}

Variable importance

.compute_report_variable_importance(params)

r if(!params$jk) {"<!--"}

Jackknife test

.compute_report_jk(params, test)

r if(!params$jk) {"-->"}

Model settings

Shown below the settings used to train the model:

.write_report_model_settings(params)

References

• Vignali, S., Barras, A. G., Arlettaz, R., Braunisch, V. (2020). SDMtune: An R package to tune and evaluate species distribution models. Ecology and Evolution, 10(20), 11488–11506. https://doi.org/10.1002/ece3.6786
• Vignali, S., Barras, A. G., Braunisch, V. (r format(packageDate("SDMtune"), format = "%Y")). SDMtune: Species Distribution Model Selection. R package version r packageVersion("SDMtune"). r ifelse(grepl("9000",packageVersion("SDMtune")), "<https://github.com/ConsBiol-unibern/SDMtune>", "<https://CRAN.R-project.org/package=SDMtune>")

SDMtune documentation built on July 9, 2023, 6:03 p.m.