Files in SIPmg
Statistical Analysis to Identify Isotope Incorporating MAGs
MD5
NAMESPACE
DESCRIPTION
R/coverage-data.R
R/taxonomy-object.R
R/functions_qSIP_MAGs.R
R/sequin_scaling_rlm.R
R/mag-table-data.R
R/master-phyloseq-data.R
R/HRSIP.R
R/sequins-data.R
R/taxonomy-table-data.R
R/cov_normalization_funcs.R
R/samples-object-data.R
R/df-boot-atomX-data.R
R/DESeq2_l2fc.R
R/sequin-dilutions-data.R
R/atomX-data.R
R/sequin_scaling_lm.R
R/fractions-data.R
R/globals.R
R/gc-content-data.R
inst/doc/SIPmg-vignette.R
inst/doc/SIPmg-vignette.Rmd
inst/doc/SIPmg-vignette.html
build/vignette.rds
vignettes/filtered_lm-example.png
vignettes/cooksd-example.png
vignettes/SIPmg-vignette.Rmd
vignettes/lm-example.png
vignettes/rlm-example.png
vignettes/mock_input_data/pool_bin_stat_w_seqins.csv
vignettes/mock_input_data/parsed_raw_cov.csv
vignettes/mock_input_data/pool_bin_stat.csv
vignettes/mock_input_data/sequins_metadata.csv
vignettes/mock_input_data/gtdbtk.ar122.summary.tsv
vignettes/mock_input_data/fake_parsed_bin.csv
vignettes/mock_input_data/coverages_outliers.csv
vignettes/mock_input_data/dilutions_data.csv
vignettes/mock_input_data/gtdbtk.bac120.summary.tsv
vignettes/mock_input_data/sequin_meta_outliers.csv
vignettes/mock_input_data/GC_content.csv
vignettes/mock_input_data/coverage_metadata.csv
vignettes/mock_input_data/fractions.csv
vignettes/mock_input_data/seq_dilution_outliers.csv
data/f_tibble.rda
data/taxonomy.object.rda
data/phylo.qSIP.rda
data/taxonomy_tibble.rda
data/sequins.rda
data/fractions.rda
data/df_atomX_boot.rda
data/seq_dil.rda
data/samples.object.rda
data/mag.table.rda
data/GC_content.rda
data/atomX.rda
man/atomX.Rd
man/taxonomy.object.Rd
man/f_tibble.Rd
man/samples.object.Rd
man/seq_dil.Rd
man/fractions.Rd
man/df_atomX_boot.Rd
man/qSIP_atom_excess_format_MAGs.Rd
man/sequins.Rd
man/phylo.qSIP.Rd
man/sample.table.Rd
man/calc_Mheavymax_MAGs.Rd
man/calc_atom_excess_MAGs.Rd
man/tax.table.Rd
man/HRSIP.Rd
man/filter_na.Rd
man/mag.table.Rd
man/incorporators_taxonomy.Rd
man/phylo.table.Rd
man/taxonomy_tibble.Rd
man/DESeq2_l2fc.Rd
man/scale_features_lm.Rd
man/filter_l2fc.Rd
man/qSIP_atom_excess_MAGs.Rd
man/scale_features_rlm.Rd
man/qSIP_bootstrap_fcr.Rd
man/GC_content.Rd
man/coverage_normalization.Rd
