phylo.table: Master phyloseq object using the MAG phyloseq objects

In SIPmg: Statistical Analysis to Identify Isotope Incorporating MAGs

Master phyloseq object using the MAG phyloseq objects

Description

Creates a phyloseq-style object using processed phyloseq objects for otu table (here, MAG table), taxa table, and sample table

Usage

phylo.table(mag, taxa, samples)

Arguments

mag	phyloseq-styled MAG table
taxa	phyloseq-styled taxa table
samples	sample information table

Value

phyloseq object for MAGs

Examples

data(mag.table,taxonomy.object,samples.object,fractions,taxonomy_tibble)
###Making phyloseq table from fractions metadata
samples.object = sample.table(fractions)
taxonomy.object = tax.table(taxonomy_tibble)




### Making master phyloseq table from scaled MAG data, taxa and fractions phyloseq data
phylo.qSIP = phylo.table(mag.table,taxonomy.object,samples.object)

SIPmg documentation built on March 7, 2023, 6:47 p.m.