Files in SNPfiltR
Interactively Filter SNP Datasets

MD5

NAMESPACE

DESCRIPTION

LICENSE

R/SNPfiltR.R R/max_depth.R R/assess_missing_data_tsne.R R/assess_missing_data_pca.R R/filter_allele_balance.R R/min_mac.R R/filter_biallelic.R R/distance_thin.R R/example_data.R R/zzz.R R/missing_by_snp.R R/hard_filter.R R/missing_by_sample.R inst/doc/reproducible-vignette.Rmd

inst/doc/reproducible-vignette.html

inst/doc/reproducible-vignette.R

inst/extdata/RMarkdown.qc.submit.script.sh

inst/extdata/make.benchmarking.vcfs.R inst/extdata/rhub.check.package.R inst/extdata/make.toy.vcfR.dataset.R inst/extdata/fastqcr.Rmd

build/vignette.rds

tests/testthat/test-distance_thin.R tests/testthat/test-hard_filter.R tests/testthat/test-min_mac.R tests/testthat/testthat.R tests/testthat/test-max_depth.R tests/testthat/test-assess_missing_data_pca.R tests/testthat/test-assess_missing_data_tsne.R tests/testthat/test-missing_by_sample.R tests/testthat/test-allele_balance.R tests/testthat/test-missing_by_snp.R tests/testthat/test-filter_biallelic.R vignettes/reproducible-vignette.Rmd

data/vcfR.example.rda

data/popmap.rda

man/vcfR.example.Rd man/popmap.Rd man/max_depth.Rd man/missing_by_sample.Rd man/hard_filter.Rd man/distance_thin.Rd man/filter_allele_balance.Rd man/min_mac.Rd man/SNPfiltR.Rd man/assess_missing_data_pca.Rd man/assess_missing_data_tsne.Rd man/missing_by_snp.Rd man/filter_biallelic.Rd man/figures/make.logo.R

SNPfiltR documentation built on Sept. 9, 2025, 5:37 p.m.

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