Man pages for SPACO
Spatial Component Analysis for Spatial Sequencing Data
| create_SpaCoObject_from_KNN | create_SpaCoObject_from_KNN |
| denoised_projection_plot | Plot denoised gene expression |
| denoise_profiles | computes smoothed gene profiles of genes present in the data. |
| dot-orthogonalizeA | Orthogonalization |
| eigenMapMatMult | Multiply two matrices using Eigen library |
| feature_plot | Plot gene expression |
| read_10x_for_spaco | Read in 10x Visium spatial transcriptomics data |
| set_projection | Set projections of Spaco Object |
| seurat_to_spaco | Wrapper to transform existing Seurat object into an... |
| SpaCo | SpaCo |
| SpaCoObject | Create a constructor function that creates an object of class... |
| Spaco_plot | Plot SPaCo meta genes. |
| spacs_to_seurat | transfer computed spatial components to existing Seurat... |
| subset_non_neighbour_cells | Filtering function to remove cells without neighbours in... |
| SVGTest | Compute the spatial variable genes of a SpaCoObject after... |
