seurat_to_spaco: Wrapper to transform existing Seurat object into an...

In SPACO: Spatial Component Analysis for Spatial Sequencing Data

Wrapper to transform existing Seurat object into an SpaCoObject.

Description

Wrapper to transform existing Seurat object into an SpaCoObject.

Usage

seurat_to_spaco(SeuratObject, assay = "SCT", n_image = 1, layer = "scale.data")

Arguments

SeuratObject	Seurat object to export
assay	Assay to export from the Seurat object. Default is SCT assay.
n_image	Number of the image to export from Seurat object. Only relevant if Seurat object contains multiple images. Default is 1.
layer	Which layer to export data from. Default is scale.data.

Value

Returns a SpaCoObject with all slots filled necessary to perform the spatial component analysis.

SPACO documentation built on March 31, 2026, 5:07 p.m.