SpaCoObject: Create a constructor function that creates an object of class...
In SPACO: Spatial Component Analysis for Spatial Sequencing Data

SpaCoObject

R Documentation

Create a constructor function that creates an object of class SpaCoObject

Create a constructor function that creates an object of class SpaCoObject

SpaCoObject(neighbours, data, coordinates)

`neighbours`	Binary matrix with weights describing if cells are to be considered neighbours or not depending on the defined distance.
`data`	Matrix with normalized and scaled gene counts. Rows as cells and genes as columns
`coordinates`	Matri with the cell coordinates on the slides. Rows and Columns in the 10x Visium case.