API for SPUTNIK
Spatially Automatic Denoising for Imaging Mass Spectrometry Toolkit
| Global functions | |
|---|---|
| .calcFactorQuantile | Source code |
| .calcFactorTMM | Source code |
| .calcFactorTMMwsp | Source code |
| .checkValidImageShape | Source code |
| .checkValidIntensityMatrix | Source code |
| .checkValidMZ | Source code |
| .csr.test.im | Source code |
| .distance.ppm | Source code |
| .distance.ppm.interval | Source code |
| .isBinary | Source code |
| .isMSIDatasetObject | Source code |
| .isMSImageObject | Source code |
| .isPeakFilter | Source code |
| .match.mz.array | Source code |
| .match.mz.interval | Source code |
| .match.mz.single | Source code |
| .mode | Source code |
| .mz.search.type | Source code |
| .mzQueryIndices | Source code |
| .normIntensity | Source code |
| .refImage | Source code |
| .remove.const.peaks | Source code |
| .scale.all | Source code |
| .stopIfNotValidGlobalMethod | Source code |
| .stopIfNotValidMSIDataset | Source code |
| .stopIfNotValidMSImage | Source code |
| .stopIfNotValidPeakFilter | Source code |
| .varTransf | Source code |
| CSRPeaksFilter | Man page Source code |
| NMI | Man page Source code |
| PCAImage | Man page |
| PCAImage,msi.dataset-method | Man page |
| SSIM | Man page Source code |
| addBorderImage | Source code |
| applyPeaksFilter | Man page |
| applyPeaksFilter,msi.dataset-method | Man page |
| applyPeaksFilter-msi.dataset-method | Man page |
| binKmeans | Man page |
| binKmeans,msi.dataset-method | Man page |
| binKmeans2 | Man page |
| binKmeans2,msi.dataset-method | Man page |
| binOtsu | Man page |
| binOtsu,ms.image-method | Man page |
| binSupervised | Man page |
| binSupervised,msi.dataset-method | Man page |
| bladderMALDIRompp2010 | Man page Source code |
| closeImage | Man page |
| closeImage,ms.image-method | Man page |
| countPixelsFilter | Man page Source code |
| createPeaksFilter | Man page Source code |
| getIntensityMat | Man page |
| getIntensityMat,msi.dataset-method | Man page |
| getMZ | Man page |
| getMZ,msi.dataset-method | Man page |
| getShapeMSI | Man page |
| getShapeMSI,msi.dataset-method | Man page |
| gini.index | Man page Source code |
| globalPeaksFilter | Man page Source code |
| invertImage | Man page |
| invertImage,ms.image-method | Man page |
| ms.image-class | Man page |
| msImage | Man page Source code |
| msi.dataset-class | Man page |
| msiDataset | Man page Source code |
| normIntensity | Man page |
| normIntensity,msi.dataset-method | Man page |
| numDetectedMSI | Man page |
| numDetectedMSI,msi.dataset-method | Man page |
| ovarianDESIDoria2016 | Man page Source code |
| plot | Man page |
| plot,ms.image,missing-method | Man page |
| refImageBinaryKmeans | Man page Source code |
| refImageBinaryKmeansMulti | Man page Source code |
| refImageBinaryOtsu | Man page Source code |
| refImageBinarySVM | Man page Source code |
| refImageContinuous | Man page Source code |
| refImageOtsu | Man page |
| remBorderImage | Source code |
| removeSmallObjects | Man page |
| removeSmallObjects,ms.image-method | Man page |
| scatter.ratio | Man page Source code |
| smoothImage | Man page |
| smoothImage,ms.image-method | Man page |
| spatial.chaos | Man page Source code |
| splitPeaksFilter | Man page Source code |
| totalIonCountMSI | Man page |
| totalIonCountMSI,msi.dataset-method | Man page |
| varTransform | Man page |
| varTransform,msi.dataset-method | Man page |
