SSN: Spatial Modeling on Stream Networks

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Geostatistical modeling for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including covariates, can be fit with ML or REML. Mapping and other graphical functions are included.

Author
Jay Ver Hoef and Erin Peterson
Date of publication
2016-10-15 18:51:51
Maintainer
Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
License
GPL-2
Version
1.1.8

View on CRAN

Man pages

additive.function
Generate an Additive Function Value
AIC.glmssn
AIC for glmssn objects
binSp
Fitted glmssn object for example data set MiddleFork.ssn
BlockPredict
Block Predicton for Streams Data
BLUP
Compute the joint mean, variance and covariance of any random...
boxplot.SpatialStreamNetwork
Box-and-whisker plots for data within SpatialStreamNetwork...
copyLSN2temp
Copies the lsn directory MiddleFork04.ssn to R's temporary...
covparms
Get Covariance Parameters
createDistMat
Calculate Hydrologic Distances for a SpatialStreamNetwork...
createSSN
Create an SpatialStreamnetwork Object
CrossValidationSSN
Compute Crossvalidation Values for glmssn Objects
CrossValidationStatsSSN
Compute Summary Statistics on Crossvalidation Values for...
designs
Design functions
EmpiricalSemivariogram
Empirical Semivariogram Based on Euclidean Distance
FCSD
Empirical Semivariogram Using Hydrologic Distance Between...
FCSD01
Empirical Semivariogram Using Hydrologic Distance Between...
fitNS
Fitted glmssn object for example data set MiddleFork.ssn
fitRE
Fitted glmssn object for example data set MiddleFork.ssn
fitSimBin
Fitted glmssn object for simulated data
fitSimGau
Fitted glmssn object for simulated data
fitSimPoi
Fitted glmssn object for simulated data
fitSp
Fitted glmssn object for example data set MiddleFork.ssn
fitSpBk
Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE1
Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE2
Fitted glmssn object for example data set MiddleFork.ssn
FUDJ
Empirical Semivariogram Using Hydrologic Distance to Nearest...
FUSD
Empirical Semivariogram Using Hydrologic Distance Between...
getPreds
Extract Predictions with associated standard errors.
glmssn
Fitting Generalized Linear Models for Spatial Stream Networks
glmssn-class
Class "glmssn"
GR2
Generalised R2
importPredpts
Import Prediction Points into a SpatialStreamNetwork or...
importSSN
Import an object of class SpatialStreamNetwork
influenceSSN-class
Class "influenceSSN"
InfoCritCompare
Compare 'glmssn' Information Criteria
mf04
imported SpatialStreamNetwork object from MiddleFork04.ssn...
mf04p
Imported SpatialStreamNetwork object from MiddleFork04.ssn...
MiddleFork04.ssn
MiddleFork04.ssn data folder
plot.glmssn.predict
Plot glmssn.predict Objects
plot.influenceSSN
Plotting Method for influenceSSN Objects
plot.SpatialStreamNetwork
Plotting Method for SpatialStreamNetwork Objects
plot.Torgegram
Plotting Method for Torgegram Objects
poiSp
Fitted glmssn object for example data set MiddleFork.ssn
predict.glmssn
Calculate Predictions for Prediction Sites
print.summary.glmssn
Print summary - S3 Method for Class 'glmssn'
putSSNdata.frame
putSSNdata.frame
reachNeiSSN
Find neighboring stream segments
residuals.glmssn
Compute Model Residuals for glmssn Objects
SimulateOnSSN
Simulating Data on Spatial Stream Networks
SpatialStreamNetwork-class
Class "SpatialStreamNetwork"
splitPredictions
Split Prediction Sets in a SpatialStreamNetwork Object
SSN-package
Spatial Modeling on Stream Networks
subsetSSN
Subset a SpatialStreamNetwork Object
summary.glmssn
Summary - S3 Method for Class 'glmssn'
Torgegram
Empirical Semivariogram Based on Hydrologic Distance and flow...
updatePath
Update Path Slot in SpatialStreamNetwork Object
varcomp
Variance Components for glmssn Objects
writeSSN
Write a SpatialStreamNetwork Object

Files in this package

SSN
SSN/inst
SSN/inst/CITATION
SSN/inst/lsndata
SSN/inst/lsndata/MiddleFork04.ssn
SSN/inst/lsndata/MiddleFork04.ssn/edges.shp
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.sbx
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shp
SSN/inst/lsndata/MiddleFork04.ssn/distance
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs/dist.net1.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs/dist.net2.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net1.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net1.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.prj
SSN/inst/lsndata/MiddleFork04.ssn/netID1.dat
SSN/inst/lsndata/MiddleFork04.ssn/sites.sbn
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.sbn
SSN/inst/lsndata/MiddleFork04.ssn/sites.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.prj
SSN/inst/lsndata/MiddleFork04.ssn/sites.shx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.dbf
SSN/inst/lsndata/MiddleFork04.ssn/binaryID.db
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/edges.sbn
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.sbn
SSN/inst/lsndata/MiddleFork04.ssn/netID2.dat
SSN/inst/lsndata/MiddleFork04.ssn/sites.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shx
SSN/inst/lsndata/MiddleFork04.ssn/sites.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/edges.shx
SSN/inst/lsndata/MiddleFork04.ssn/edges.dbf
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.sbx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shp
SSN/inst/lsndata/MiddleFork04.ssn/sites.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/sites.shp
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.sbn
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shx
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shp
SSN/inst/doc
SSN/inst/doc/STARS.pdf
SSN/inst/doc/STARS.Rnw
SSN/inst/doc/SSN.Rnw
SSN/inst/doc/SSN.pdf
SSN/src
SSN/src/test_fc_UNIX.c
SSN/src/shapefilSSN.h
SSN/src/RdbfwriteSSN.c
SSN/src/foreignSSN.h
SSN/src/dbfopenSSN.c
SSN/src/init.c
SSN/NAMESPACE
SSN/data
SSN/data/modelFits.rda
SSN/data/mf04.rda
SSN/data/mf04p.rda
SSN/data/datalist
SSN/R
SSN/R/classes.R
SSN/R/exp.taildown.R
SSN/R/importSSN.R
SSN/R/rref.R
SSN/R/covparms.R
SSN/R/epa.tailup.R
SSN/R/theta.ini.R
SSN/R/untrans.theta.R
SSN/R/varcomp.glmssn.R
SSN/R/CrossValidationStatsSSN.r
SSN/R/getPreds.R
SSN/R/invall.R
SSN/R/BlockPredict.R
SSN/R/m2LL.stream.R
SSN/R/AIC.glmssn.R
SSN/R/BLUP.R
SSN/R/mar.taildown.R
SSN/R/copyLSN2temp.R
SSN/R/plot.influenceSSN.R
SSN/R/lin.taildown.R
SSN/R/UK4Apply.R
SSN/R/getStreamDistMat.R
SSN/R/designs.R
SSN/R/summary.glmssn.predict.R
SSN/R/subsetSSN.r
SSN/R/distGeo.R
SSN/R/glmssn.R
SSN/R/putSSNdata.frame.r
SSN/R/mginv.R
SSN/R/InfoCritCompare.R
SSN/R/arg.error.check.multi.R
SSN/R/createSSN.R
SSN/R/exp.Euclid.R
SSN/R/plot.SpatialStreamNetwork.R
SSN/R/lin.tailup.R
SSN/R/residuals.glmssn.R
SSN/R/predict.glmssn.R
SSN/R/additive.function.R
SSN/R/SimulateOnSSN.R
SSN/R/mar.tailup.R
SSN/R/dataXY.R
SSN/R/summary.glmssn.R
SSN/R/summary.SpatialStreamNetwork.R
SSN/R/writeSSN.r
SSN/R/show_SpatialStreamNetwork.R
SSN/R/updatePath.r
SSN/R/X.design.R
SSN/R/qqnorm.SpatialStreamNetwork.r
SSN/R/get.rid.fc.R
SSN/R/createDistMat.R
SSN/R/makeCovMat.R
SSN/R/gau.Euclid.R
SSN/R/CrossValidationSSN.r
SSN/R/FUSD.R
SSN/R/EmpiricalSemivariogam.R
SSN/R/importPredpts.R
SSN/R/sph.tailup.R
SSN/R/SSN-methods.R
SSN/R/names.SpatialStreamNetwork.R
SSN/R/sph.Euclid.R
SSN/R/glmssn1.R
SSN/R/createbinaryID.r
SSN/R/hist.SpatialStreamNetwork.r
SSN/R/FUDJ.R
SSN/R/plot.glmssn.predict.R
SSN/R/exp.tailup.R
SSN/R/write.dbf.SSN.r
SSN/R/hist.influenceSSN.r
SSN/R/FCSD01.R
SSN/R/sph.taildown.R
SSN/R/plot.Torgegram.r
SSN/R/epa.taildown.R
SSN/R/cau.Euclid.R
SSN/R/Torgegram.R
SSN/R/getSSNdata.frame.r
SSN/R/FCSD.R
SSN/R/xyplot.EmpiricalSemivariogramSSN.R
SSN/R/summary.influenceSSN.R
SSN/R/reachNeiSSN.R
SSN/R/qqnorm.influenceSSN.r
SSN/R/boxplot.SpatialStreamNetwork.R
SSN/R/GR2.R
SSN/R/split.predictions.R
SSN/vignettes
SSN/vignettes/STARS.Rnw
SSN/vignettes/SSN.Rnw
SSN/MD5
SSN/build
SSN/build/vignette.rds
SSN/DESCRIPTION
SSN/man
SSN/man/as.SpatialLines.SpatialStreamNetwork.rd
SSN/man/copyLSN2temp.Rd
SSN/man/MiddleFork04.ssn.Rd
SSN/man/plot.glmssn.predict.Rd
SSN/man/createDistMat.Rd
SSN/man/varcomp.Rd
SSN/man/covparms.Rd
SSN/man/getSSNdata.frame.rd
SSN/man/plot.Torgegram.Rd
SSN/man/glmssn.Rd
SSN/man/designs.Rd
SSN/man/additive.function.Rd
SSN/man/putSSNdata.frame.Rd
SSN/man/glmssn-class.Rd
SSN/man/importPredpts.Rd
SSN/man/writeSSN.Rd
SSN/man/FCSD.Rd
SSN/man/fitSpRE2.Rd
SSN/man/getPreds.Rd
SSN/man/summary.glmssn.Rd
SSN/man/plot.influenceSSN.Rd
SSN/man/mf04.Rd
SSN/man/fitSimPoi.Rd
SSN/man/FUDJ.Rd
SSN/man/fitSpBk.Rd
SSN/man/fitSpRE1.Rd
SSN/man/poiSp.Rd
SSN/man/boxplot.SpatialStreamNetwork.Rd
SSN/man/AIC.glmssn.Rd
SSN/man/mf04p.Rd
SSN/man/subsetSSN.Rd
SSN/man/fitNS.Rd
SSN/man/importSSN.Rd
SSN/man/EmpiricalSemivariogram.Rd
SSN/man/splitPredictions.Rd
SSN/man/GR2.Rd
SSN/man/getStreamDistMat.rd
SSN/man/fitSp.Rd
SSN/man/Torgegram.Rd
SSN/man/reachNeiSSN.Rd
SSN/man/residuals.glmssn.Rd
SSN/man/fitSimGau.Rd
SSN/man/fitRE.Rd
SSN/man/createSSN.Rd
SSN/man/SimulateOnSSN.Rd
SSN/man/fitSimBin.Rd
SSN/man/updatePath.Rd
SSN/man/SSN-package.Rd
SSN/man/print.summary.glmssn.Rd
SSN/man/FUSD.Rd
SSN/man/plot.SpatialStreamNetwork.Rd
SSN/man/predict.glmssn.Rd
SSN/man/BlockPredict.Rd
SSN/man/SpatialStreamNetwork-class.Rd
SSN/man/FCSD01.Rd
SSN/man/binSp.Rd
SSN/man/BLUP.Rd
SSN/man/CrossValidationSSN.Rd
SSN/man/InfoCritCompare.Rd
SSN/man/CrossValidationStatsSSN.Rd
SSN/man/influenceSSN-class.Rd