SSN: Spatial Modeling on Stream Networks

Geostatistical modeling for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including covariates, can be fit with ML or REML. Mapping and other graphical functions are included.

AuthorJay Ver Hoef and Erin Peterson
Date of publication2016-10-15 18:51:51
MaintainerJay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
LicenseGPL-2
Version1.1.8

View on CRAN

Man pages

additive.function: Generate an Additive Function Value

AIC.glmssn: AIC for glmssn objects

binSp: Fitted glmssn object for example data set MiddleFork.ssn

BlockPredict: Block Predicton for Streams Data

BLUP: Compute the joint mean, variance and covariance of any random...

boxplot.SpatialStreamNetwork: Box-and-whisker plots for data within SpatialStreamNetwork...

copyLSN2temp: Copies the lsn directory MiddleFork04.ssn to R's temporary...

covparms: Get Covariance Parameters

createDistMat: Calculate Hydrologic Distances for a SpatialStreamNetwork...

createSSN: Create an SpatialStreamnetwork Object

CrossValidationSSN: Compute Crossvalidation Values for glmssn Objects

CrossValidationStatsSSN: Compute Summary Statistics on Crossvalidation Values for...

designs: Design functions

EmpiricalSemivariogram: Empirical Semivariogram Based on Euclidean Distance

FCSD: Empirical Semivariogram Using Hydrologic Distance Between...

FCSD01: Empirical Semivariogram Using Hydrologic Distance Between...

fitNS: Fitted glmssn object for example data set MiddleFork.ssn

fitRE: Fitted glmssn object for example data set MiddleFork.ssn

fitSimBin: Fitted glmssn object for simulated data

fitSimGau: Fitted glmssn object for simulated data

fitSimPoi: Fitted glmssn object for simulated data

fitSp: Fitted glmssn object for example data set MiddleFork.ssn

fitSpBk: Fitted glmssn object for example data set MiddleFork.ssn

fitSpRE1: Fitted glmssn object for example data set MiddleFork.ssn

fitSpRE2: Fitted glmssn object for example data set MiddleFork.ssn

FUDJ: Empirical Semivariogram Using Hydrologic Distance to Nearest...

FUSD: Empirical Semivariogram Using Hydrologic Distance Between...

getPreds: Extract Predictions with associated standard errors.

glmssn: Fitting Generalized Linear Models for Spatial Stream Networks

glmssn-class: Class "glmssn"

GR2: Generalised R2

importPredpts: Import Prediction Points into a SpatialStreamNetwork or...

importSSN: Import an object of class SpatialStreamNetwork

influenceSSN-class: Class "influenceSSN"

InfoCritCompare: Compare 'glmssn' Information Criteria

mf04: imported SpatialStreamNetwork object from MiddleFork04.ssn...

mf04p: Imported SpatialStreamNetwork object from MiddleFork04.ssn...

MiddleFork04.ssn: MiddleFork04.ssn data folder

plot.glmssn.predict: Plot glmssn.predict Objects

plot.influenceSSN: Plotting Method for influenceSSN Objects

plot.SpatialStreamNetwork: Plotting Method for SpatialStreamNetwork Objects

plot.Torgegram: Plotting Method for Torgegram Objects

poiSp: Fitted glmssn object for example data set MiddleFork.ssn

predict.glmssn: Calculate Predictions for Prediction Sites

print.summary.glmssn: Print summary - S3 Method for Class 'glmssn'

putSSNdata.frame: putSSNdata.frame

reachNeiSSN: Find neighboring stream segments

residuals.glmssn: Compute Model Residuals for glmssn Objects

SimulateOnSSN: Simulating Data on Spatial Stream Networks

SpatialStreamNetwork-class: Class "SpatialStreamNetwork"

splitPredictions: Split Prediction Sets in a SpatialStreamNetwork Object

SSN-package: Spatial Modeling on Stream Networks

subsetSSN: Subset a SpatialStreamNetwork Object

summary.glmssn: Summary - S3 Method for Class 'glmssn'

Torgegram: Empirical Semivariogram Based on Hydrologic Distance and flow...

updatePath: Update Path Slot in SpatialStreamNetwork Object

varcomp: Variance Components for glmssn Objects

writeSSN: Write a SpatialStreamNetwork Object

Files in this package

SSN
SSN/inst
SSN/inst/CITATION
SSN/inst/lsndata
SSN/inst/lsndata/MiddleFork04.ssn
SSN/inst/lsndata/MiddleFork04.ssn/edges.shp
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.sbx
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shp
SSN/inst/lsndata/MiddleFork04.ssn/distance
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/CapeHorn/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs/dist.net1.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/obs/dist.net2.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/Knapp/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net1.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net1.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net2.b.RData
SSN/inst/lsndata/MiddleFork04.ssn/distance/pred1km/dist.net2.a.RData
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.prj
SSN/inst/lsndata/MiddleFork04.ssn/netID1.dat
SSN/inst/lsndata/MiddleFork04.ssn/sites.sbn
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.sbn
SSN/inst/lsndata/MiddleFork04.ssn/sites.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.prj
SSN/inst/lsndata/MiddleFork04.ssn/sites.shx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.dbf
SSN/inst/lsndata/MiddleFork04.ssn/binaryID.db
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/edges.sbn
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.sbn
SSN/inst/lsndata/MiddleFork04.ssn/netID2.dat
SSN/inst/lsndata/MiddleFork04.ssn/sites.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shx
SSN/inst/lsndata/MiddleFork04.ssn/sites.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/edges.shx
SSN/inst/lsndata/MiddleFork04.ssn/edges.dbf
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.prj
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.sbx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shp
SSN/inst/lsndata/MiddleFork04.ssn/sites.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.sbx
SSN/inst/lsndata/MiddleFork04.ssn/edges.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/sites.shp
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shp.xml
SSN/inst/lsndata/MiddleFork04.ssn/CapeHorn.shx
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.sbn
SSN/inst/lsndata/MiddleFork04.ssn/pred1km.shx
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.dbf
SSN/inst/lsndata/MiddleFork04.ssn/Knapp.shp
SSN/inst/doc
SSN/inst/doc/STARS.pdf
SSN/inst/doc/STARS.Rnw
SSN/inst/doc/SSN.Rnw
SSN/inst/doc/SSN.pdf
SSN/src
SSN/src/test_fc_UNIX.c
SSN/src/shapefilSSN.h
SSN/src/RdbfwriteSSN.c
SSN/src/foreignSSN.h
SSN/src/dbfopenSSN.c
SSN/src/init.c
SSN/NAMESPACE
SSN/data
SSN/data/modelFits.rda
SSN/data/mf04.rda
SSN/data/mf04p.rda
SSN/data/datalist
SSN/R
SSN/R/classes.R SSN/R/exp.taildown.R SSN/R/importSSN.R SSN/R/rref.R SSN/R/covparms.R SSN/R/epa.tailup.R SSN/R/theta.ini.R SSN/R/untrans.theta.R SSN/R/varcomp.glmssn.R
SSN/R/CrossValidationStatsSSN.r
SSN/R/getPreds.R SSN/R/invall.R SSN/R/BlockPredict.R SSN/R/m2LL.stream.R SSN/R/AIC.glmssn.R SSN/R/BLUP.R SSN/R/mar.taildown.R SSN/R/copyLSN2temp.R SSN/R/plot.influenceSSN.R SSN/R/lin.taildown.R SSN/R/UK4Apply.R SSN/R/getStreamDistMat.R SSN/R/designs.R SSN/R/summary.glmssn.predict.R
SSN/R/subsetSSN.r
SSN/R/distGeo.R SSN/R/glmssn.R
SSN/R/putSSNdata.frame.r
SSN/R/mginv.R SSN/R/InfoCritCompare.R SSN/R/arg.error.check.multi.R SSN/R/createSSN.R SSN/R/exp.Euclid.R SSN/R/plot.SpatialStreamNetwork.R SSN/R/lin.tailup.R SSN/R/residuals.glmssn.R SSN/R/predict.glmssn.R SSN/R/additive.function.R SSN/R/SimulateOnSSN.R SSN/R/mar.tailup.R SSN/R/dataXY.R SSN/R/summary.glmssn.R SSN/R/summary.SpatialStreamNetwork.R
SSN/R/writeSSN.r
SSN/R/show_SpatialStreamNetwork.R
SSN/R/updatePath.r
SSN/R/X.design.R
SSN/R/qqnorm.SpatialStreamNetwork.r
SSN/R/get.rid.fc.R SSN/R/createDistMat.R SSN/R/makeCovMat.R SSN/R/gau.Euclid.R
SSN/R/CrossValidationSSN.r
SSN/R/FUSD.R SSN/R/EmpiricalSemivariogam.R SSN/R/importPredpts.R SSN/R/sph.tailup.R SSN/R/SSN-methods.R SSN/R/names.SpatialStreamNetwork.R SSN/R/sph.Euclid.R SSN/R/glmssn1.R
SSN/R/createbinaryID.r
SSN/R/hist.SpatialStreamNetwork.r
SSN/R/FUDJ.R SSN/R/plot.glmssn.predict.R SSN/R/exp.tailup.R
SSN/R/write.dbf.SSN.r
SSN/R/hist.influenceSSN.r
SSN/R/FCSD01.R SSN/R/sph.taildown.R
SSN/R/plot.Torgegram.r
SSN/R/epa.taildown.R SSN/R/cau.Euclid.R SSN/R/Torgegram.R
SSN/R/getSSNdata.frame.r
SSN/R/FCSD.R SSN/R/xyplot.EmpiricalSemivariogramSSN.R SSN/R/summary.influenceSSN.R SSN/R/reachNeiSSN.R
SSN/R/qqnorm.influenceSSN.r
SSN/R/boxplot.SpatialStreamNetwork.R SSN/R/GR2.R SSN/R/split.predictions.R
SSN/vignettes
SSN/vignettes/STARS.Rnw
SSN/vignettes/SSN.Rnw
SSN/MD5
SSN/build
SSN/build/vignette.rds
SSN/DESCRIPTION
SSN/man
SSN/man/as.SpatialLines.SpatialStreamNetwork.rd
SSN/man/copyLSN2temp.Rd SSN/man/MiddleFork04.ssn.Rd SSN/man/plot.glmssn.predict.Rd SSN/man/createDistMat.Rd SSN/man/varcomp.Rd SSN/man/covparms.Rd
SSN/man/getSSNdata.frame.rd
SSN/man/plot.Torgegram.Rd SSN/man/glmssn.Rd SSN/man/designs.Rd SSN/man/additive.function.Rd SSN/man/putSSNdata.frame.Rd SSN/man/glmssn-class.Rd SSN/man/importPredpts.Rd SSN/man/writeSSN.Rd SSN/man/FCSD.Rd SSN/man/fitSpRE2.Rd SSN/man/getPreds.Rd SSN/man/summary.glmssn.Rd SSN/man/plot.influenceSSN.Rd SSN/man/mf04.Rd SSN/man/fitSimPoi.Rd SSN/man/FUDJ.Rd SSN/man/fitSpBk.Rd SSN/man/fitSpRE1.Rd SSN/man/poiSp.Rd SSN/man/boxplot.SpatialStreamNetwork.Rd SSN/man/AIC.glmssn.Rd SSN/man/mf04p.Rd SSN/man/subsetSSN.Rd SSN/man/fitNS.Rd SSN/man/importSSN.Rd SSN/man/EmpiricalSemivariogram.Rd SSN/man/splitPredictions.Rd SSN/man/GR2.Rd
SSN/man/getStreamDistMat.rd
SSN/man/fitSp.Rd SSN/man/Torgegram.Rd SSN/man/reachNeiSSN.Rd SSN/man/residuals.glmssn.Rd SSN/man/fitSimGau.Rd SSN/man/fitRE.Rd SSN/man/createSSN.Rd SSN/man/SimulateOnSSN.Rd SSN/man/fitSimBin.Rd SSN/man/updatePath.Rd SSN/man/SSN-package.Rd SSN/man/print.summary.glmssn.Rd SSN/man/FUSD.Rd SSN/man/plot.SpatialStreamNetwork.Rd SSN/man/predict.glmssn.Rd SSN/man/BlockPredict.Rd SSN/man/SpatialStreamNetwork-class.Rd SSN/man/FCSD01.Rd SSN/man/binSp.Rd SSN/man/BLUP.Rd SSN/man/CrossValidationSSN.Rd SSN/man/InfoCritCompare.Rd SSN/man/CrossValidationStatsSSN.Rd SSN/man/influenceSSN-class.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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